Detail information of GWHGAAZE033180


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010066949.10PREDICTED: pectate lyase [Eucalyptus grandis]
COGYP_001628843.18E-29hypothetical protein Bpet0241
Swissprottr|P15722|PLY59_SOLLC2E-169Probable pectate lyase P59 (Precursor)
trEMBLtr|A0A059BFL8|A0A059BFL8_EUCGR0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT5G15110.12E-128Pectate lyase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene25442622545892-
GWHAAZE00000094mRNA25442622545892-
GWHAAZE00000094exon25442622544486-
GWHAAZE00000094exon25446082544850-
GWHAAZE00000094exon25449762545394-
GWHAAZE00000094exon25456552545892-
GWHAAZE00000094CDS25456552545892-
GWHAAZE00000094CDS25449762545394-
GWHAAZE00000094CDS25446082544850-
GWHAAZE00000094CDS25442622544486-
Transcript Sequence

Network for GWHGAAZE033180

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41092903.50E-23
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.616
SRR3591706second leaf0.130
SRR3591707mature leaf1.034
SRR3591708Shoot apex1.392
SRR3591709Stem11.038
SRR3591710White floral bud1482.144
SRR3591711White flower75.854
SRR3591712Green floral bud1564.717
SRR3591713Yellow flower48.722
SRP173429 SRR8316895Juvenile bud stage 247.587
SRR8316896Juvenile bud stage 670.528
SRR8316897Juvenile bud stage 289.705
SRR8316894Third green stage 225.150
SRR8316900Third green stage 835.972
SRR8316901Third green stage 906.743
SRR8316898Complete white stage 0.921
SRR8316899Complete white stage 6.319
SRR8316903Complete white stage 1.121
SRR8316902Silver flowering stage11.517
SRR8316904Silver flowering stage22.742
SRR8316905Silver flowering stage6.535
SRR8316906Gold flowering stage 3.190
SRR8316907Gold flowering stage 1.791
SRR8316908Gold flowering stage 1.523
SRP132670SRR6706286Control442.009
SRR6706287Light intensity 50%445.091
SRR6706288Light intensity 20%398.249
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11227.475
CNS0095593Slightly white alabastrum(diploid) 2923.684
CNS0095594Slightly white alabastrum(diploid) 31584.912
CNS0095595Whole white alabastrum(diploid) 22013.394
CNS0095596Whole white alabastrum(diploid) 32509.904
CNS0095597Whole white alabastrum(diploid) 42538.986
CNS0095598Silvery flower (diploied) 160.204
CNS0095599Silvery flower (diploied) 2199.710
CNS0095600Silvery flower (diploied) 347.474
CNS0095601Golden flower (diploid) 167.853
CNS0095602Golden flower (diploid) 241.329
CNS0095603Golden flower (diploid) 338.540
CNS0095604Slightly white alabastrum(tetraploid) 11770.843
CNS0095605Slightly white alabastrum(tetraploid) 22116.726
CNS0095606Slightly white alabastrum(tetraploid) 31.724
CNS0095607Whole white alabastrum(tetraploid) 13064.616
CNS0095608Whole white alabastrum(tetraploid) 23221.873
CNS0095609Whole white alabastrum(tetraploid) 31521.667
CNS0095610Silvery flower (tetraploid) 129.287
CNS0095611Silvery flower (tetraploid) 2130.539
CNS0095612Silvery flower (tetraploid) 3297.962
CNS0095613Golden flower (tetraploid) 147.712
CNS0095614Golden flower (tetraploid) 211.268
CNS0095615Golden flower (tetraploid) 3167.439
CRA001975CRR073297Stem 1282.358
CRR073298Stem 2279.654
CRR073299Stem 3156.098
CRR073300Leaf 1746.133
CRR073301Leaf 2537.649
CRR073302Leaf 3243.813
CRR073303Juvenile bud 1518.792
CRR073304Juvenile bud 2312.590
CRR073305Juvenile bud 344.945
CRR073306Third green 1235.016
CRR073307Third green 2270.908
CRR073308Third green 3249.068
CRR073309Second white 18.879
CRR073310Second white 247.305
CRR073311Second white 350.596
CRR073312Silver flowering 1242.712
CRR073313Silver flowering 2239.858
CRR073314Silver flowering 3142.314
CRR073315Gold flowering 1230.803
CRR073316Gold flowering 267.844
CRR073317Gold flowering 357.181
CRR073318Tawny withering 1266.200
CRR073319Tawny withering 2235.508
CRR073320Tawny withering 3225.442