Gene detail

Detail information of GWHGAAZE033178

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010661026.1	1.0212E-169	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Vitis vinifera]
Swissprot	tr\|Q6X5Y6\|WRI1_ARATH	3E-94	Ethylene-responsive transcription factor WRI1
trEMBL	tr\|A5ACS0\|A5ACS0_VITVI	1E-165	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN79925.1}
TAIR10	AT3G54320.3	6E-79	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2527051	2529421	-
GWHAAZE00000094	mRNA	2527051	2529421	-
GWHAAZE00000094	exon	2527051	2527583	-
GWHAAZE00000094	exon	2528134	2528210	-
GWHAAZE00000094	exon	2528303	2528353	-
GWHAAZE00000094	exon	2528444	2528517	-
GWHAAZE00000094	exon	2528614	2528711	-
GWHAAZE00000094	exon	2529136	2529421	-
GWHAAZE00000094	CDS	2529136	2529421	-
GWHAAZE00000094	CDS	2528614	2528711	-
GWHAAZE00000094	CDS	2528444	2528517	-
GWHAAZE00000094	CDS	2528303	2528353	-
GWHAAZE00000094	CDS	2528134	2528210	-
GWHAAZE00000094	CDS	2527051	2527583	-

Transcript Sequence
>GWHTAAZE033217 ATGGCAGCAACGGTGGTGAAGAGTGAAGAAAACAATGGAAGGCGACGTGTGTGTATAGTGGACGGTGAAGCAAAGTGCGTCAAAAGAAGGAGAAGAGATGCGGGTCTCGTTGCACTTAACTGCAATCCAAATATGCGTCAAGAAGAGCAAATTTCTTCACCTACCACGGTGAAGAGAAGTTCGAGATTCAGGGGAGTTAGCAGGCATAGGTGGACAGGACGATTCGAAGCACATTTGTGGGATAAACTTTCTTGGAATACAACACAGAAGAAGAAAGGGAAACAAGTTTATCTAGGAGCTTATGATGAAGAAGAATCTGCAGCAAGAGCATATGATTTAGCCGCGCTCAAGTATTGGGGGCCATCAACTTTCACCAATTTCCCGGTCTCTGATTATGAGGAGGAGATTGAGATTATGGCAACAGTAACAAAAGAAGAGTACCTAGCCTCGCTTAGAAGAAAGAGCAGTGGCTTCTCAAGAGGGGTATCCAAGTACAGAGGAGTTGCAAGGCACCATCACAATGGGAGATGGGAAGCTAGAATAGGCAGAGTTTTTGGGAACAAGTACCTCTACCTTGGAACCTACGGTACCCAAGAGGAGGCTGCTCGTGCATATGACATAGCGGCAATAGAATACAGAGGGGTTAATGCAGTGACTAACTTTGATTTGAGTACTTACATCAGATGGTTGAAGCCAGCAGGAGCAAACACTCTATCAATTGCAGAAGAACCACAAGCTATCGCAGAAACCCCGAGACTACCGTTTTGTAACTTCAATGCAGGAAAAGAATCCCAATCTTTATTCATTAATGCGTCTTTCAATGGAGAAGAACATAGATCTCAACCAAAAAAGGATGTATTAGCGAGCATAATCCCCGTCATTTCTTCGTGCAGCAAATCTTCTTCTCCAACGGCACTTGGATTACTCCTCCGCTCATCGATATTTAGAGAATTGGTGCAGAAGAATTCGATTATAAGTGATGAGGAGAGCGATGAGGAAGATAAGAAGAACCAACCACATATGGGTAGTGGTGATGATGAGCATGGTGAAACAGTTTATGATGAAGGATTCAACTATGGATATAATTGTCAAGAAAATCCACTTGGAAGAACAATATAA

Network for GWHGAAZE033178

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	61	120	1.60E-14
PF00847.21	AP2	163	214	6.60E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.086
	SRR3591706	second leaf	0.768
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.569
	SRR3591709	Stem	0.654
	SRR3591710	White floral bud	0.209
	SRR3591711	White flower	0.568
	SRR3591712	Green floral bud	0.193
	SRR3591713	Yellow flower	7.429
SRP173429	SRR8316895	Juvenile bud stage	0.119
	SRR8316896	Juvenile bud stage	0.182
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.121
	SRR8316900	Third green stage	0.449
	SRR8316901	Third green stage	0.354
	SRR8316898	Complete white stage	0.200
	SRR8316899	Complete white stage	0.328
	SRR8316903	Complete white stage	0.419
	SRR8316902	Silver flowering stage	0.629
	SRR8316904	Silver flowering stage	0.849
	SRR8316905	Silver flowering stage	0.222
	SRR8316906	Gold flowering stage	1.509
	SRR8316907	Gold flowering stage	1.635
	SRR8316908	Gold flowering stage	0.665
SRP132670	SRR6706286	Control	0.477
	SRR6706287	Light intensity 50%	0.293
	SRR6706288	Light intensity 20%	0.452
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.699
	CNS0095593	Slightly white alabastrum(diploid) 2	0.406
	CNS0095594	Slightly white alabastrum(diploid) 3	0.303
	CNS0095595	Whole white alabastrum(diploid) 2	0.079
	CNS0095596	Whole white alabastrum(diploid) 3	0.597
	CNS0095597	Whole white alabastrum(diploid) 4	0.245
	CNS0095598	Silvery flower (diploied) 1	0.715
	CNS0095599	Silvery flower (diploied) 2	0.338
	CNS0095600	Silvery flower (diploied) 3	0.432
	CNS0095601	Golden flower (diploid) 1	0.522
	CNS0095602	Golden flower (diploid) 2	1.334
	CNS0095603	Golden flower (diploid) 3	1.015
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.246
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.295
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.004
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.088
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.161
	CNS0095610	Silvery flower (tetraploid) 1	0.200
	CNS0095611	Silvery flower (tetraploid) 2	0.035
	CNS0095612	Silvery flower (tetraploid) 3	0.508
	CNS0095613	Golden flower (tetraploid) 1	1.179
	CNS0095614	Golden flower (tetraploid) 2	0.700
	CNS0095615	Golden flower (tetraploid) 3	2.264
CRA001975	CRR073297	Stem 1	0.369
	CRR073298	Stem 2	0.413
	CRR073299	Stem 3	0.365
	CRR073300	Leaf 1	0.111
	CRR073301	Leaf 2	0.375
	CRR073302	Leaf 3	0.392
	CRR073303	Juvenile bud 1	0.292
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.280
	CRR073307	Third green 2	0.089
	CRR073308	Third green 3	0.171
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.202
	CRR073311	Second white 3	0.489
	CRR073312	Silver flowering 1	1.001
	CRR073313	Silver flowering 2	1.133
	CRR073314	Silver flowering 3	4.968
	CRR073315	Gold flowering 1	0.095
	CRR073316	Gold flowering 2	0.427
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.266
	CRR073319	Tawny withering 2	0.123
	CRR073320	Tawny withering 3	0.345