Gene detail

Detail information of GWHGAAZE033170

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011098592.1	1.1696E-155	PREDICTED: aldose 1-epimerase-like [Sesamum indicum]
COG	YP_004538067.1	1E-82	aldose 1-epimerase
trEMBL	tr\|W9RUZ9\|W9RUZ9_9ROSA	5E-151	Aldose 1-epimerase {ECO:0000256\|PIRNR:PIRNR005096}
TAIR10	AT5G15140.1	3E-101	Galactose mutarotase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2398704	2400655	-
GWHAAZE00000094	mRNA	2398704	2400655	-
GWHAAZE00000094	exon	2398704	2399362	-
GWHAAZE00000094	exon	2399808	2399915	-
GWHAAZE00000094	exon	2400032	2400155	-
GWHAAZE00000094	exon	2400313	2400362	-
GWHAAZE00000094	exon	2400475	2400655	-
GWHAAZE00000094	CDS	2400475	2400655	-
GWHAAZE00000094	CDS	2400313	2400362	-
GWHAAZE00000094	CDS	2400032	2400155	-
GWHAAZE00000094	CDS	2399808	2399915	-
GWHAAZE00000094	CDS	2398704	2399362	-

Transcript Sequence
>GWHTAAZE033209 ATGACCAATGTATCCCTCTTGCTCTGTTGCACCATTCTTTCTTTTGCAATTGTTGTGAATGGTTCAACATATATTAATGGAGAAGAGGTTGGGTTTTATGAAATAAAGACAGGAAATTTCTCTGTAAAGTTAACTAACTGGGGTGCATCTCTCGTGTCCGTCGTTGTTCCTGACAGATATGGAAACTTGGCTGATGTTGTTCTTGGTTACGATTCAGTCGAAGATTACATGAATGATACACAGTACTTTGGTGCTATTGTGGGTCGGGTTGCTAACCGGATTTCAGGAGCCAGTTTCACCTTAAATGGAATCGTTTACCAGCTAGATAACAACGAGAAAAACAAAACCCTTCATGGTGGGAAGCATGGATTCAATAAAGTTGTTTGGAAGGTGCAAAATCATGTGAAGGATGGCCCCTCTCCTAGTATTACCTTCAGCTATTACAGTCCTGATGGTGATCAAGGATTTCCTGGGGATCTACTTGTCAATGTGACTTATGCTCTCACTGGACCATACAAACTCGAAGTAAACATGGAGGCCAAAGCTCTAAACAAGCCCACTCCAGTGAATCTAGCCCTTCACGCTTACTGGAACCTCGGTGGTCACAATTCTGGCGGCATCCTCTCCCACAAGGTCAAGATATTTGCTTCCCACCTAACTCCCACAGTCCGGTCCATCCCCACCGGCCAAATCCTACCGGTCAAGGGCACACCCTACGACTTCCTTCAACCCCACACTATCACAAGCATGATGAACGACACTACATTACATGCTCTAATCATCAATCCGCTAAAAGAACTTGTTCCTGACAATGGATACGATGTCAACTATGTGCTTGATGGCGGGGTTGATAAAATGAAGGAAGTGGCTGTAGTGTGTGATGAAAAGTCAGGGAGGGTGGTGGAGCTGTGTACAAGTGCTCCTGGGATGCAGTTTTATACAGGAAATTATGTGAAGAATGTGAGGGGGAAAGGTGATTTTGTTTATGGGGACCATGCTGGATTGGCTTTGGAGACTCAGGGGTTCCCTGATGCAGTGCATCATCCTAATTTCCCTTCACAGATTGTTGGTCCAGGGGAGGTTTATAGGCATAAGATGTTGTATACTTTTTCAACCAATTAG

Network for GWHGAAZE033170

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01263.21	Aldose_epim	33	369	6.70E-89

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01785	galM, GALM	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0019318	biological_process	hexose metabolic process
GO:0030246	molecular_function	carbohydrate binding
GO:0003824	molecular_function	catalytic activity
GO:0016853	molecular_function	isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.312
	SRR3591706	second leaf	1.072
	SRR3591707	mature leaf	1.457
	SRR3591708	Shoot apex	0.919
	SRR3591709	Stem	3.186
	SRR3591710	White floral bud	217.833
	SRR3591711	White flower	15.009
	SRR3591712	Green floral bud	75.559
	SRR3591713	Yellow flower	11.087
SRP173429	SRR8316895	Juvenile bud stage	0.319
	SRR8316896	Juvenile bud stage	1.201
	SRR8316897	Juvenile bud stage	0.319
	SRR8316894	Third green stage	0.038
	SRR8316900	Third green stage	30.305
	SRR8316901	Third green stage	12.590
	SRR8316898	Complete white stage	0.992
	SRR8316899	Complete white stage	2.307
	SRR8316903	Complete white stage	1.740
	SRR8316902	Silver flowering stage	4.616
	SRR8316904	Silver flowering stage	6.662
	SRR8316905	Silver flowering stage	2.176
	SRR8316906	Gold flowering stage	2.222
	SRR8316907	Gold flowering stage	2.479
	SRR8316908	Gold flowering stage	2.762
SRP132670	SRR6706286	Control	36.189
	SRR6706287	Light intensity 50%	46.939
	SRR6706288	Light intensity 20%	33.995
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.592
	CNS0095593	Slightly white alabastrum(diploid) 2	2.954
	CNS0095594	Slightly white alabastrum(diploid) 3	3.998
	CNS0095595	Whole white alabastrum(diploid) 2	93.787
	CNS0095596	Whole white alabastrum(diploid) 3	97.428
	CNS0095597	Whole white alabastrum(diploid) 4	224.444
	CNS0095598	Silvery flower (diploied) 1	18.660
	CNS0095599	Silvery flower (diploied) 2	74.068
	CNS0095600	Silvery flower (diploied) 3	17.524
	CNS0095601	Golden flower (diploid) 1	22.992
	CNS0095602	Golden flower (diploid) 2	16.177
	CNS0095603	Golden flower (diploid) 3	12.685
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.573
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.476
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.280
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.718
	CNS0095608	Whole white alabastrum(tetraploid) 2	110.656
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.264
	CNS0095610	Silvery flower (tetraploid) 1	7.110
	CNS0095611	Silvery flower (tetraploid) 2	26.488
	CNS0095612	Silvery flower (tetraploid) 3	54.486
	CNS0095613	Golden flower (tetraploid) 1	11.798
	CNS0095614	Golden flower (tetraploid) 2	5.064
	CNS0095615	Golden flower (tetraploid) 3	31.195
CRA001975	CRR073297	Stem 1	6.557
	CRR073298	Stem 2	4.051
	CRR073299	Stem 3	2.302
	CRR073300	Leaf 1	39.825
	CRR073301	Leaf 2	11.025
	CRR073302	Leaf 3	3.811
	CRR073303	Juvenile bud 1	61.502
	CRR073304	Juvenile bud 2	61.690
	CRR073305	Juvenile bud 3	7.293
	CRR073306	Third green 1	36.050
	CRR073307	Third green 2	52.665
	CRR073308	Third green 3	43.118
	CRR073309	Second white 1	1.073
	CRR073310	Second white 2	12.404
	CRR073311	Second white 3	10.065
	CRR073312	Silver flowering 1	34.362
	CRR073313	Silver flowering 2	23.964
	CRR073314	Silver flowering 3	18.858
	CRR073315	Gold flowering 1	49.695
	CRR073316	Gold flowering 2	16.631
	CRR073317	Gold flowering 3	14.382
	CRR073318	Tawny withering 1	32.609
	CRR073319	Tawny withering 2	37.947
	CRR073320	Tawny withering 3	35.051