Gene detail

Detail information of GWHGAAZE033167

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074356.1	0	PREDICTED: eukaryotic initiation factor 4A-3-like [Sesamum indicum]
COG	YP_007250064.1	2E-74	DNA/RNA helicase, superfamily II
Swissprot	tr\|Q94A52\|RH2_ARATH	0	DEAD-box ATP-dependent RNA helicase 2
trEMBL	tr\|F6HHF5\|F6HHF5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51651.1}
TAIR10	AT3G19760.1	5E-162	eukaryotic initiation factor 4A-III

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2355875	2361084	+
GWHAAZE00000094	mRNA	2355875	2361084	+
GWHAAZE00000094	exon	2355875	2356127	+
GWHAAZE00000094	exon	2356734	2356943	+
GWHAAZE00000094	exon	2358634	2358676	+
GWHAAZE00000094	exon	2358843	2359083	+
GWHAAZE00000094	exon	2359224	2359304	+
GWHAAZE00000094	exon	2359780	2359887	+
GWHAAZE00000094	exon	2360013	2360132	+
GWHAAZE00000094	exon	2360332	2360469	+
GWHAAZE00000094	exon	2360743	2360829	+
GWHAAZE00000094	exon	2360971	2361084	+
GWHAAZE00000094	CDS	2355875	2356127	+
GWHAAZE00000094	CDS	2356734	2356943	+
GWHAAZE00000094	CDS	2358634	2358676	+
GWHAAZE00000094	CDS	2358843	2359083	+
GWHAAZE00000094	CDS	2359224	2359304	+
GWHAAZE00000094	CDS	2359780	2359887	+
GWHAAZE00000094	CDS	2360013	2360132	+
GWHAAZE00000094	CDS	2360332	2360469	+
GWHAAZE00000094	CDS	2360743	2360829	+
GWHAAZE00000094	CDS	2360971	2361084	+

Transcript Sequence
>GWHTAAZE033206 ATGGCGGTAGTGGTGCAACAGCATCTCAACAACAGAGGAGGGCGGAGGGTGGTGGCGGAAGATGACTCGAAGCTGCTGATATTCGAGCCGACAAAGGGGGTGGTGCCGGTGATGAGCTTCGACGAGATGGGGTTAAAGGACGATTTACTAAGAGGAATATACCAATGTGCCATGGAGAAACCCTCAGCTATTCAGCAGAGAGCTTTGCTTCCCATCATATCTGGCAGAGACGTCATCGCCCAGGCCCAGTCTGACGGTACCGAATCGAACAACGCCGGTGGGGCAGTCACAGTCAACGTCCGATGCTCCAATGGCTCAAAGTTCTCCGTACAGATTCGCCTGGAATCTACCGTCGGATCGTTCAAGTCCGTTCTCGCTCAGAACTGTGATATTCCGGCCGAACAGCAGCGATTGATTTACAAAGGACGGATCCTCAAGGATGATCAAAGCCTTGAGAGCTACGTCATTGGCCATACCTCATCTTTGAAGTCATACCTAGCTGCCAAAGTCCAAGCTTTAATCTTGTCACCTACGAGGGAGCTAGCAGATCAGACTGAGAAATTTATATTGGCGGTTGGTGATTTCATTAATATAAAGGCGCATGCATGTATTGGTGGCAAAAGCATTGGCGAGGATATCAGGAAGCTAGAACACGGAGTTCACATTGTATCAGGAACTCCAGGCAGAGTTTCTGACATGATCAAAAGGAGAACATTACGAACTAGAGGCATCAAAATTTTAGTTCTTGATGAATCGGATGAGATGCTGAGCCGAGGTTTTAAGGATCAAATTTATGATGTCTACAGATATCTTCCACCAGAGCTTCAGGTTGTTTTGGTGTCTGCCACCCTTCCTAAAGAAATTTTGGAGGTGACAAGCAAATTTATGACAGATCCTGTGAGAATCCTTGTGAAACGTGATGAGTTGACTCTAGAGGGTATCAAGCAGTTTTTTGTTGCAGTAGAAAGAGAAGATTGGAAATTTGATACTTTGTGTGATCTCTATGATACCCTTACGATCACCCAGTGTGTTATTTTCTGCAACACGAAGCGGAAGGTGGATTGGTTGAGTGAGAAGATGAGAGACAATAACTTCACAGTGTCGTCGATGCACGCAGACATGCCTCAAAAGGAGAGAGATGCAATAATGGGAGAGTTCCGGTCTGGCACAGCTCGTGTTCTGATTACAACAGACGTGTCCTTGGTGATCAACTATGATCTTCCTAACGACCGAGAGGTTTACATCCATCGCATTGGTCGCTCTGGTCGTTTCGGACGCAAGGGTGTTGCAATAAATTTTGTGAAAAATGATGATATTAAGATTCTACGTGACATAGAGCAGTACTACAGTACCCAGATTGACGAAATGCCTATGAATGTTGCTGATTTGATATAG

Network for GWHGAAZE033167

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.24	ubiquitin	98	163	6.10E-16
PF00270.30	DEAD	167	288	1.70E-28
PF00271.32	Helicase_C	327	425	1.30E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13025	EIF4A3, FAL1	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.613
	SRR3591706	second leaf	5.311
	SRR3591707	mature leaf	1.697
	SRR3591708	Shoot apex	26.235
	SRR3591709	Stem	12.233
	SRR3591710	White floral bud	11.336
	SRR3591711	White flower	12.498
	SRR3591712	Green floral bud	15.632
	SRR3591713	Yellow flower	3.177
SRP173429	SRR8316895	Juvenile bud stage	29.170
	SRR8316896	Juvenile bud stage	39.363
	SRR8316897	Juvenile bud stage	25.353
	SRR8316894	Third green stage	10.858
	SRR8316900	Third green stage	26.175
	SRR8316901	Third green stage	18.669
	SRR8316898	Complete white stage	5.896
	SRR8316899	Complete white stage	40.085
	SRR8316903	Complete white stage	12.548
	SRR8316902	Silver flowering stage	4.876
	SRR8316904	Silver flowering stage	8.012
	SRR8316905	Silver flowering stage	2.724
	SRR8316906	Gold flowering stage	6.906
	SRR8316907	Gold flowering stage	9.519
	SRR8316908	Gold flowering stage	12.747
SRP132670	SRR6706286	Control	34.734
	SRR6706287	Light intensity 50%	29.819
	SRR6706288	Light intensity 20%	28.719
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.678
	CNS0095593	Slightly white alabastrum(diploid) 2	40.204
	CNS0095594	Slightly white alabastrum(diploid) 3	29.426
	CNS0095595	Whole white alabastrum(diploid) 2	32.906
	CNS0095596	Whole white alabastrum(diploid) 3	26.758
	CNS0095597	Whole white alabastrum(diploid) 4	18.151
	CNS0095598	Silvery flower (diploied) 1	22.196
	CNS0095599	Silvery flower (diploied) 2	61.409
	CNS0095600	Silvery flower (diploied) 3	31.583
	CNS0095601	Golden flower (diploid) 1	66.684
	CNS0095602	Golden flower (diploid) 2	42.596
	CNS0095603	Golden flower (diploid) 3	39.016
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.648
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.987
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.168
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.974
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.335
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.166
	CNS0095610	Silvery flower (tetraploid) 1	19.133
	CNS0095611	Silvery flower (tetraploid) 2	27.847
	CNS0095612	Silvery flower (tetraploid) 3	18.175
	CNS0095613	Golden flower (tetraploid) 1	10.374
	CNS0095614	Golden flower (tetraploid) 2	16.968
	CNS0095615	Golden flower (tetraploid) 3	6.592
CRA001975	CRR073297	Stem 1	32.836
	CRR073298	Stem 2	30.695
	CRR073299	Stem 3	35.570
	CRR073300	Leaf 1	25.123
	CRR073301	Leaf 2	27.910
	CRR073302	Leaf 3	26.564
	CRR073303	Juvenile bud 1	28.790
	CRR073304	Juvenile bud 2	11.888
	CRR073305	Juvenile bud 3	30.912
	CRR073306	Third green 1	6.212
	CRR073307	Third green 2	8.242
	CRR073308	Third green 3	9.129
	CRR073309	Second white 1	8.898
	CRR073310	Second white 2	5.165
	CRR073311	Second white 3	4.122
	CRR073312	Silver flowering 1	4.436
	CRR073313	Silver flowering 2	3.401
	CRR073314	Silver flowering 3	4.366
	CRR073315	Gold flowering 1	1.955
	CRR073316	Gold flowering 2	4.129
	CRR073317	Gold flowering 3	2.016
	CRR073318	Tawny withering 1	8.678
	CRR073319	Tawny withering 2	9.607
	CRR073320	Tawny withering 3	10.349