Gene detail

Detail information of GWHGAAZE033155

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABX82929.1	0	LO4 [Solanum pennellii]
COG	YP_005367043.1	2E-118	efflux ABC transporter permease/ATP-binding protein
Swissprot	tr\|Q9LJX0\|AB19B_ARATH	0	ABC transporter B family member 19
trEMBL	tr\|B6CG43\|B6CG43_SOLPN	0	LO4 {ECO:0000313\|EMBL:ABX82929.1}
TAIR10	AT3G28860.1	0	ATP binding cassette subfamily B19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	1944000	1951530	+
GWHAAZE00000094	mRNA	1944000	1951530	+
GWHAAZE00000094	exon	1944000	1944248	+
GWHAAZE00000094	exon	1944373	1944427	+
GWHAAZE00000094	exon	1944834	1945009	+
GWHAAZE00000094	exon	1945467	1945667	+
GWHAAZE00000094	exon	1946161	1946420	+
GWHAAZE00000094	exon	1946517	1946833	+
GWHAAZE00000094	exon	1946925	1947148	+
GWHAAZE00000094	exon	1947262	1948081	+
GWHAAZE00000094	exon	1948182	1948423	+
GWHAAZE00000094	exon	1950322	1951530	+
GWHAAZE00000094	CDS	1944000	1944248	+
GWHAAZE00000094	CDS	1944373	1944427	+
GWHAAZE00000094	CDS	1944834	1945009	+
GWHAAZE00000094	CDS	1945467	1945667	+
GWHAAZE00000094	CDS	1946161	1946420	+
GWHAAZE00000094	CDS	1946517	1946833	+
GWHAAZE00000094	CDS	1946925	1947148	+
GWHAAZE00000094	CDS	1947262	1948081	+
GWHAAZE00000094	CDS	1948182	1948423	+
GWHAAZE00000094	CDS	1950322	1951530	+

Transcript Sequence
>GWHTAAZE033194 ATGGCGGAGACAACGGAGGCGAAGCCAATGCCGGAGGCGGATGAGAAGAAGAAGGAGCAGAGTTTGCCTTTCTATCAGTTGTTTAGTTTCGCCGATAAGTATGATTGGCTTCTAATGATATCTGGAAGCTTCGGTGCTATCATTCATGGCTCTTCTATGCCTGTTTTCTTCCTCCTTTTTGGTGAAATGGTTAACGGTTTCGGGAAGAATCAATCTGATTTGCACAAATTAACTGCTGAAGTATCCAAGTATGCGCTGTATTTCGTTTATCTCGGATTGATTGTATGCGTATCCTCCTATGCAGAGATTAGTTGTTGGATGTATACTGGGGAAAGGCAAGTGAGTGCATTGAGGAAGAAGTACTTGGAGGCGGTGTTGAAACAAGACGTTGGCTTCTTTGATACAGATGCTAGAACTGGGGATATTGTTTTCAGTGTCTCTACAGATACTCTCCTTGTCCAAGATGCCATTAGTGAGAAGGTGGGGAACTTCATACATTATCTATCGACATTTTTGGCGGGATTGGTGGTTGGTTTTGTGTCAGCATGGAGGCTAGCTCTACTTAGCGTTGCAGTGATTCCAGGAATTGCTTTTGCTGGGGGTTTGTATGCATATACTCTCACTGGTCTCACTTCCAAGAGTCGCGAATCTTATGCCAATGCTGGTATAGTTGCTGAGCAGGCCATTGCACAAGTTAGGACAGTATACTCGTACGTTGGGGAGAGCAAAGCCCTAAATGCATATTCGGATGCAATACAGAACACACTCAAGCTCGGCTACAAGGCTGGGATGGCCAAAGGGCTGGGACTCGGATGTACCTACGGAATAGCGTGCATGTCTTGGGCCCTTGTTTTCTGGTACGCTGGTGTATTTATTAGGAATGGACAGACCGATGGGGGAAAGGCATTCACCGCTATTTTCTCTGCCATTGTTGGTGGCATGAGTTTGGGTCAGTCTTTTTCAAATCTTGGAGCTTTCAGTAAAGGTAAAGCAGCTGGCTACAAGTTAATGGAAATTATAAAGCAAAAACCTTCCATAATTCAGGACCCCTTGGATGGAAAGTGCTTGACTGAAGTTAGTGGTAACATTGAATTCAAAGATGTAATGTTCAGCTACCCATCACGGCCCGATGTAATAATTTTTAGAGATTTTTCCATATTTTTCCCAACCGGAAAGACAGTTGCGGTTGTTGGTGGTAGCGGATCAGGGAAAAGTACCGTTGTTTCCCTTATAGAAAGGTTCTACGACCCTATTCAGGGGCAAATTTTACTCGACAACGTGGACATAAAGACCTTGCAGCTGAGGTGGTTGCGTGATCAGATTGGTCTTGTGAACCAAGAACCTGCACTCTTTGCCACCACCATACTCGAGAATATACTTTATGGAAAACCTGATGCAACCATGGCTGAAGTTGAAGCATCTGCATCTGCTGCTAATGCTCATAGCTTTATTACCTTGCTCCCTAAAGGTTATAACACCCAGGTGGGAGAGCGAGGAGTCCAACTTTCTGGTGGTCAAAAGCAGAGAATTGCAATTGCAAGGGCTATGTTGAAAAACCCAAAAATCCTTCTCCTTGATGAAGCGACGAGTGCTCTCGATGCAGGTTCTGAAAGCATTGTTCAAGAAGCTCTAGACCGCCTTATGGTTGGAAGGACGACCGTGGTAGTTGCTCATCGCCTCTCTACCATAAGAAACGTTGATTCAATTGCGGTTATACAACAAGGGCAAGTCGTTGAGACCGGGACCCACGAGGAACTAATTTCCAAAGCTGGGGCCTACGCTTCATTAATTAGATTCCAAGAAATGGTGGGGAATAGAGATTTTTCGAATCCTTCGACCCACCGTACACGTTCTTCAAGACTAAGCCATTCACTGTCTACAAAATCTCTAAGCCTCCGTTCGGGTAGTTTAAGGAATTTGAGCTATCAGTACAGCACTGGTGCTGATGGTCGTATAGAAATGGTCTCCAATGCCGAAACAGATAGGAAAAATCCAGCACCAAGTGGATATTTCTTCAGACTTCTAAAGCTAAACGCTCCTGAATGGCCTTATTCAATAATGGGCGCTGTAGGATCCATACTTTCGGGTTTTATCGGGCCAACTTTTGCGATTGTGATGAGCAATATGATCGAGGTGTTCTACTACACAAACACCACTAGAATGGAAAGGAAGACGAAGGAGTACGTTTTCATTTACATTGGAGCCGGTCTATACGCTGTCGTTGCATATTTAATACAACATTACTTCTTCAGTATTATGGGAGAGAATCTCACTACACGAGTAAGGAGGATGATGCTTGCAGCAATCCTAAGAAATGAAGTTGGGTGGTACGATGAGGATGAGCACAACTCGAGCCTTGTTGCAGCTCGGCTAGCCACTGATGCTGCTGATGTGAAATCGGCCATTGCAGAGAGGATCTCTGTGATATTGCAGAACATGACTTCTCTTCTCACTTCATTCATTGTTGCTTTCATAATTGAATGGAGGGTCTCACTTCTCATCTTAGGCACATTCCCGCTTCTTGTCCTTGCCAATTTTGCTCAGCAACTTTCTCTCAAAGGTTTTGCTGGAGACACAGCCAAGGCCCATGCAAAAACTAGCATGATTGCAGGGGAGGGAGTTAGCAACATTCGAACTGTTGCGGCTTTCAATGCCCAAGACAAGATCCTTTCCCTATTTTGCCATGAACTCCGCATCCCCCAGCTTGGCAGCCTTCGCCGCAGCCAATCGTCTGGCATTCTCTTTGGCCTCTCCCAGCTCGCTCTCTATGCCTCCGAAGCTCTAATCCTATGGTACGGCGCACACCTCGTTAGCAAAGGCGCCTCTACCTTCTCGAAAGTTATTAAGGTTTTCGTCGTTTTAGTCATCACCGCCAATTCGGTTGCCGAAACTGTCAGCCTTGCTCCTGAAATAATCAGGGGTGGTGAAGCCGTTGGATCGGTGTTCTCAATTCTCGACAGATCAACCAAGATAGACCCTGATGATCCTGATGCTGAACCGGTTGAGTCTATTCGCGGAGATATCGAATTACGCCATGTTGACTTTGCTTACCCTTCAAGGCCCGATGTCAATGTGTTCAAGGACCTCAATCTTAGGATCCGAGCTGGCCAGAGCCAAGCTCTTGTTGGGGCCAGTGGGTCTGGGAAGAGTTCAGTCGTTGCGTTGATCGAGCGATTTTACGATCCGACAGCTGGGAAAGTTATGATTGATGGGAAAGACATTAGGAGGTTAAATTTGAAGAGTCTTCGCCTCAAAATCGGTTTGGTTCAACAAGAGCCAGCCCTTTTTGCTGCCAGCATTTTGGATAATATTGCGTATGGGAAAGAAGGGGCAACAGAAGCAGAGGTGATTGAAGCGGCTCGTGCTGCAAATGTGCACACATTCGTTAGCGGTTTGCCTAATGGATATAAAACTCCAGTAGGGGAAAGAGGCGTTCAGCTCTCTGGGGGACAAAAACAAAGGATTGCAATTGCTCGCGCAGTTCTTAAGGACCCGACAATCCTATTACTTGATGAAGCCACGAGCGCACTCGATGCAGAGTCTGAGTGTGTGTTACAAGAAGCGCTAGAAAGGCTAATGCGGGGCCGAACCACCGTGCTTGTGGCCCACCGTTTATCGACCATACGTGGGGTCGACACTATCTGTGTTGTGCAGGATGGGCGAATTGTAGAACAAGGTAGCCATGGTGAGCTAATGAGCCGGCCTGAAGGGGCTTATTCTAGACTCTTGCAGCTACAACACCATCATTTGTGA

Network for GWHGAAZE033155

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	43	313	7.00E-58
PF00005.28	ABC_tran	383	530	5.70E-33
PF00664.24	ABC_membrane	686	957	5.00E-50
PF00005.28	ABC_tran	1027	1175	3.40E-32

Protein Sequence

>GWHPAAZE033176
MAETTEAKPMPEADEKKKEQSLPFYQLFSFADKYDWLLMISGSFGAIIHGSSMPVFFLLFGEMVNGFGKNQSDLHKLTAEVSKYALYFVYLGLIVCVSSYAEISCWMYTGERQVSALRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIVAEQAIAQVRTVYSYVGESKALNAYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPLDGKCLTEVSGNIEFKDVMFSYPSRPDVIIFRDFSIFFPTGKTVAVVGGSGSGKSTVVSLIERFYDPIQGQILLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEASASAANAHSFITLLPKGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELISKAGAYASLIRFQEMVGNRDFSNPSTHRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMVSNAETDRKNPAPSGYFFRLLKLNAPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTNTTRMERKTKEYVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWYDEDEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIIEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFCHELRIPQLGSLRRSQSSGILFGLSQLALYASEALILWYGAHLVSKGASTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTKIDPDDPDAEPVESIRGDIELRHVDFAYPSRPDVNVFKDLNLRIRAGQSQALVGASGSGKSSVVALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASILDNIAYGKEGATEAEVIEAARAANVHTFVSGLPNGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDTICVVQDGRIVEQGSHGELMSRPEGAYSRLLQLQHHHL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	185.196
	SRR3591706	second leaf	50.686
	SRR3591707	mature leaf	5.738
	SRR3591708	Shoot apex	70.512
	SRR3591709	Stem	69.696
	SRR3591710	White floral bud	44.128
	SRR3591711	White flower	7.303
	SRR3591712	Green floral bud	87.155
	SRR3591713	Yellow flower	1.331
SRP173429	SRR8316895	Juvenile bud stage	36.130
	SRR8316896	Juvenile bud stage	52.931
	SRR8316897	Juvenile bud stage	28.191
	SRR8316894	Third green stage	43.109
	SRR8316900	Third green stage	142.636
	SRR8316901	Third green stage	136.200
	SRR8316898	Complete white stage	19.891
	SRR8316899	Complete white stage	262.958
	SRR8316903	Complete white stage	43.247
	SRR8316902	Silver flowering stage	13.883
	SRR8316904	Silver flowering stage	14.528
	SRR8316905	Silver flowering stage	4.435
	SRR8316906	Gold flowering stage	5.338
	SRR8316907	Gold flowering stage	4.239
	SRR8316908	Gold flowering stage	4.143
SRP132670	SRR6706286	Control	120.508
	SRR6706287	Light intensity 50%	135.027
	SRR6706288	Light intensity 20%	157.137
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.684
	CNS0095593	Slightly white alabastrum(diploid) 2	68.434
	CNS0095594	Slightly white alabastrum(diploid) 3	33.017
	CNS0095595	Whole white alabastrum(diploid) 2	52.683
	CNS0095596	Whole white alabastrum(diploid) 3	45.368
	CNS0095597	Whole white alabastrum(diploid) 4	58.188
	CNS0095598	Silvery flower (diploied) 1	4.675
	CNS0095599	Silvery flower (diploied) 2	7.658
	CNS0095600	Silvery flower (diploied) 3	16.590
	CNS0095601	Golden flower (diploid) 1	4.192
	CNS0095602	Golden flower (diploid) 2	4.819
	CNS0095603	Golden flower (diploid) 3	4.246
	CNS0095604	Slightly white alabastrum(tetraploid) 1	54.716
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.089
	CNS0095606	Slightly white alabastrum(tetraploid) 3	158.618
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.216
	CNS0095608	Whole white alabastrum(tetraploid) 2	49.989
	CNS0095609	Whole white alabastrum(tetraploid) 3	58.114
	CNS0095610	Silvery flower (tetraploid) 1	12.852
	CNS0095611	Silvery flower (tetraploid) 2	7.644
	CNS0095612	Silvery flower (tetraploid) 3	2.280
	CNS0095613	Golden flower (tetraploid) 1	0.554
	CNS0095614	Golden flower (tetraploid) 2	1.932
	CNS0095615	Golden flower (tetraploid) 3	0.517
CRA001975	CRR073297	Stem 1	120.640
	CRR073298	Stem 2	125.252
	CRR073299	Stem 3	104.351
	CRR073300	Leaf 1	273.072
	CRR073301	Leaf 2	250.168
	CRR073302	Leaf 3	208.797
	CRR073303	Juvenile bud 1	298.221
	CRR073304	Juvenile bud 2	157.177
	CRR073305	Juvenile bud 3	621.189
	CRR073306	Third green 1	15.565
	CRR073307	Third green 2	12.379
	CRR073308	Third green 3	19.714
	CRR073309	Second white 1	1.748
	CRR073310	Second white 2	1.401
	CRR073311	Second white 3	0.663
	CRR073312	Silver flowering 1	0.445
	CRR073313	Silver flowering 2	0.414
	CRR073314	Silver flowering 3	0.275
	CRR073315	Gold flowering 1	3.026
	CRR073316	Gold flowering 2	4.455
	CRR073317	Gold flowering 3	11.076
	CRR073318	Tawny withering 1	30.154
	CRR073319	Tawny withering 2	15.620
	CRR073320	Tawny withering 3	22.814