Gene detail

Detail information of GWHGAAZE033120

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACU19070.1	3.71089E-45	unknown [Glycine max]
Swissprot	tr\|Q93Z27\|CML45_ARATH	6E-38	Probable calcium-binding protein CML45
trEMBL	tr\|C6TB68\|C6TB68_SOYBN	1E-45	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU19070.1}
TAIR10	AT5G39670.1	2E-26	Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	1087321	1087641	+
GWHAAZE00000094	mRNA	1087321	1087641	+
GWHAAZE00000094	exon	1087321	1087641	+
GWHAAZE00000094	CDS	1087321	1087641	+

Transcript Sequence
>GWHTAAZE033159 ATGGTGATGGGTGAAATGGGTTTTTTTTGCGATTCTGAGAGTGAAAAGCTTCAAGAAAAGTTGAGTTCTGAGGACGTTTTTAAACTATTTGAAGAGCGAGAACCTAGCTTGGATGAGGTTAAGAATGCTTTTGATGTGTTTGATGAGAATAGAGATGGGTTTATTGATGCAAGAGAATTGCAAAGAGTTCTATATGCTCTGGGCTTAAAGAATGAATCAGAGATGGAAAACTGCAAGAGGATGATTAGGGTTTTTGATGAAAATGAAGATGAGAAAATAGATTTCAATGAATTTGTAAAGCTTATGGAGAGCAGCTTTTGA

Network for GWHGAAZE033120

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.7	EF-hand_7	39	103	5.90E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02183	CALM	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway - plant	map04016
		Apelin signaling pathway	map04371
		Calcium signaling pathway	map04020
		Phosphatidylinositol signaling system	map04070
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		GnRH signaling pathway	map04912
		Estrogen signaling pathway	map04915
		Oxytocin signaling pathway	map04921
		Melanogenesis	map04916
		Renin secretion	map04924
		Aldosterone synthesis and secretion	map04925
		Adrenergic signaling in cardiomyocytes	map04261
		Vascular smooth muscle contraction	map04270
		Salivary secretion	map04970
		Gastric acid secretion	map04971
		Dopaminergic synapse	map04728
		Long-term potentiation	map04720
		Neurotrophin signaling pathway	map04722
		Phototransduction	map04744
		Phototransduction - fly	map04745
		Olfactory transduction	map04740
		Inflammatory mediator regulation of TRP channels	map04750
		Circadian entrainment	map04713
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	80.153
	SRR3591706	second leaf	20.038
	SRR3591707	mature leaf	28.935
	SRR3591708	Shoot apex	28.209
	SRR3591709	Stem	228.261
	SRR3591710	White floral bud	90.014
	SRR3591711	White flower	125.274
	SRR3591712	Green floral bud	47.141
	SRR3591713	Yellow flower	103.602
SRP173429	SRR8316895	Juvenile bud stage	45.212
	SRR8316896	Juvenile bud stage	12.028
	SRR8316897	Juvenile bud stage	36.278
	SRR8316894	Third green stage	13.949
	SRR8316900	Third green stage	15.722
	SRR8316901	Third green stage	28.763
	SRR8316898	Complete white stage	1.840
	SRR8316899	Complete white stage	50.951
	SRR8316903	Complete white stage	4.116
	SRR8316902	Silver flowering stage	3.555
	SRR8316904	Silver flowering stage	4.660
	SRR8316905	Silver flowering stage	4.611
	SRR8316906	Gold flowering stage	49.773
	SRR8316907	Gold flowering stage	27.364
	SRR8316908	Gold flowering stage	51.292
SRP132670	SRR6706286	Control	0.651
	SRR6706287	Light intensity 50%	0.549
	SRR6706288	Light intensity 20%	0.474
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.073
	CNS0095593	Slightly white alabastrum(diploid) 2	57.665
	CNS0095594	Slightly white alabastrum(diploid) 3	54.854
	CNS0095595	Whole white alabastrum(diploid) 2	22.180
	CNS0095596	Whole white alabastrum(diploid) 3	4.213
	CNS0095597	Whole white alabastrum(diploid) 4	19.581
	CNS0095598	Silvery flower (diploied) 1	110.136
	CNS0095599	Silvery flower (diploied) 2	107.587
	CNS0095600	Silvery flower (diploied) 3	43.290
	CNS0095601	Golden flower (diploid) 1	155.832
	CNS0095602	Golden flower (diploid) 2	57.466
	CNS0095603	Golden flower (diploid) 3	54.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.245
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.640
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.088
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.204
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.249
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.206
	CNS0095610	Silvery flower (tetraploid) 1	11.407
	CNS0095611	Silvery flower (tetraploid) 2	4.336
	CNS0095612	Silvery flower (tetraploid) 3	41.163
	CNS0095613	Golden flower (tetraploid) 1	34.699
	CNS0095614	Golden flower (tetraploid) 2	12.777
	CNS0095615	Golden flower (tetraploid) 3	6.697
CRA001975	CRR073297	Stem 1	7.136
	CRR073298	Stem 2	12.074
	CRR073299	Stem 3	5.756
	CRR073300	Leaf 1	19.663
	CRR073301	Leaf 2	28.574
	CRR073302	Leaf 3	10.056
	CRR073303	Juvenile bud 1	13.674
	CRR073304	Juvenile bud 2	17.338
	CRR073305	Juvenile bud 3	19.368
	CRR073306	Third green 1	5.000
	CRR073307	Third green 2	3.203
	CRR073308	Third green 3	2.508
	CRR073309	Second white 1	1.169
	CRR073310	Second white 2	4.282
	CRR073311	Second white 3	3.238
	CRR073312	Silver flowering 1	17.697
	CRR073313	Silver flowering 2	16.749
	CRR073314	Silver flowering 3	13.217
	CRR073315	Gold flowering 1	15.058
	CRR073316	Gold flowering 2	27.284
	CRR073317	Gold flowering 3	25.445
	CRR073318	Tawny withering 1	33.226
	CRR073319	Tawny withering 2	76.987
	CRR073320	Tawny withering 3	33.189