Gene detail

Detail information of GWHGAAZE033108

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHE93341.1	0	sucrose non-fermenting 1 [Camellia sinensis]
COG	YP_002760435.1	6E-34	putative serine/threonine protein kinase
Swissprot	tr\|Q38997\|KIN10_ARATH	0	SNF1-related protein kinase catalytic subunit alpha KIN10
trEMBL	tr\|W0D447\|W0D447_CAMSI	0	Sucrose non-fermenting 1 {ECO:0000313\|EMBL:AHE93341.1}
TAIR10	AT3G01090.2	0	SNF1 kinase homolog 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	902495	909040	+
GWHAAZE00000094	mRNA	902495	909040	+
GWHAAZE00000094	exon	902495	902684	+
GWHAAZE00000094	exon	903256	903440	+
GWHAAZE00000094	exon	903556	903738	+
GWHAAZE00000094	exon	903880	904011	+
GWHAAZE00000094	exon	905013	905198	+
GWHAAZE00000094	exon	905691	905780	+
GWHAAZE00000094	exon	905846	905929	+
GWHAAZE00000094	exon	907564	907704	+
GWHAAZE00000094	exon	908008	908238	+
GWHAAZE00000094	exon	908783	908833	+
GWHAAZE00000094	exon	908927	909040	+
GWHAAZE00000094	CDS	902495	902684	+
GWHAAZE00000094	CDS	903256	903440	+
GWHAAZE00000094	CDS	903556	903738	+
GWHAAZE00000094	CDS	903880	904011	+
GWHAAZE00000094	CDS	905013	905198	+
GWHAAZE00000094	CDS	905691	905780	+
GWHAAZE00000094	CDS	905846	905929	+
GWHAAZE00000094	CDS	907564	907704	+
GWHAAZE00000094	CDS	908008	908238	+
GWHAAZE00000094	CDS	908783	908833	+
GWHAAZE00000094	CDS	908927	909040	+

Transcript Sequence
>GWHTAAZE033147 ATGGATGGATCAGCTGGCCAAGGTGGCAGAAGCGTTGATATGTTTCTGTCAAACTATAAGCTTGGGAAAACTCTTGGCATTGGTTCATTTGGTAAGGTGAAAATTGCAGAACATGCGTTGACAGGGCACAAAGTGGCAATCAAGATCCTTAACCGTCGGAAGATAAAGAACATGGACATGGAAGAAAAAGTTAGGAGAGAAATCAAAATATTGAGATTGTTTATGCATCCGCATATTATTCGTCTTTATGAAGTTATAGAGACACCGACAGATATTTATGTTGTTATGGAGTATGTGAAGTCCGGTGAGCTATTTGATTACATTGTGGAGAAAGGTAGGTTACAGGAGGATGAAGCTCGCAATTTTTTTCAGCAGATCATTTCTGGTGTGGAGTACTGCCATAGGAATATGGTGGTTCATAGAGACCTTAAGCCCGAGAACCTGCTTTTAGATTCTAAATGCAATGTCAAGATTGCTGATTTTGGTTTGAGCAATATCATGCGTGATGGTCATTTTCTGAAAACAAGTTGTGGAAGCCCAAACTATGCTGCCCCGGAGGTTATATCTGGGAAATTGTATGCTGGACCCGAGGTAGACGTCTGGAGCTGTGGTGTTATCCTGTATGCTCTTCTCTGTGGTACCCTTCCTTTTGACGATGAAAATATTCCTAACCTTTTTAAGAAAATAAAGGGTGGAATATATACCCTTCCTAGCCATTTATCACCTGGTGCAAGAGATTTGATTCCAAGGATGCTTGTGGTTGACCCTATGAAGCGAATGACTATTCCAGAGATTCGTGTGCACCCATGGTTCCAGTCTCATCTTCCACGCTACTTAGCTGTGCCTCCACCAGATACAATGCAACAAGCAAAAAAGATTGATGAGGAGATTCTTCAAGAGGTTGTTAAGATGGGATTTGACAGGAACAACCTTGTTGATTCTCTCCGTAATCGAGTTCAAAATGAGGGTACTGTTGCATACTATTTGCTATTAGACAACCGGTTCCGTGTTTCCAGCGGCTATCTTGGAGCTGAATTTCAGGAGTCGATGGATAGTTTTAACCGTATGAATTCAAATGAGGGTGCAGCTTCAATTGTTGGTCAACGCGTTCCAGGATACATGGATTATCAAGGAGTGGGGTCTAGACCCCAGTTCCCAGTTGTTGAAAGGAAATGGGCTCTTGGACTTCAGTCTCGAGCTCATCCTCGTGAGATAATGACAGAAGTTCTGAAAGCTCTGCAAGAACTGAATGTGGGTTGGAAAAAGATAGGACATTACAATATGAAATGCAGGTGGATTCCTGGTCATCACGAGGGCATGGTAAACAATCCGATGCATGCCAATAATTACTTCGGGGATGAATCTGCTATCATAGAGAATGACAGTGCTACAAGGCCCGATGTGGTCAAGTTTGAAGTGCAGTGGGAAGGGGAGGCGGATTCGACCCTCAACCGCCCAGTGGGAAGTGGGACGCTTTACAAAACTCGTGAGGAGAAGTACCTACTCGATCTACAGAGGGTCCAGGGCCCACAATTTCTGTTCCTGGATCTTTGTGCAGCGTTCCTTGCTCAGCTTCGGGTTCTATAA

Network for GWHGAAZE033108

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	19	271	7.10E-80
PF00627.32	UBA	293	329	6.60E-06
PF02149.20	KA1	492	527	7.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_AMPK

KEGG pathway

KO	Enzyme	pathway	mapID
K07198	PRKAA, AMPK	Apelin signaling pathway	map04371
		FoxO signaling pathway	map04068
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Tight junction	map04530
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		Adipocytokine signaling pathway	map04920
		Oxytocin signaling pathway	map04921
		Axon regeneration	map04361
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Circadian rhythm	map04710
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	78.140
	SRR3591706	second leaf	48.176
	SRR3591707	mature leaf	47.018
	SRR3591708	Shoot apex	59.909
	SRR3591709	Stem	69.741
	SRR3591710	White floral bud	105.536
	SRR3591711	White flower	95.800
	SRR3591712	Green floral bud	112.490
	SRR3591713	Yellow flower	74.317
SRP173429	SRR8316895	Juvenile bud stage	45.834
	SRR8316896	Juvenile bud stage	82.461
	SRR8316897	Juvenile bud stage	37.276
	SRR8316894	Third green stage	32.903
	SRR8316900	Third green stage	98.271
	SRR8316901	Third green stage	98.096
	SRR8316898	Complete white stage	49.812
	SRR8316899	Complete white stage	110.727
	SRR8316903	Complete white stage	78.836
	SRR8316902	Silver flowering stage	47.963
	SRR8316904	Silver flowering stage	70.855
	SRR8316905	Silver flowering stage	30.378
	SRR8316906	Gold flowering stage	97.864
	SRR8316907	Gold flowering stage	91.520
	SRR8316908	Gold flowering stage	96.954
SRP132670	SRR6706286	Control	77.018
	SRR6706287	Light intensity 50%	79.100
	SRR6706288	Light intensity 20%	80.632
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	73.563
	CNS0095593	Slightly white alabastrum(diploid) 2	57.411
	CNS0095594	Slightly white alabastrum(diploid) 3	57.717
	CNS0095595	Whole white alabastrum(diploid) 2	81.391
	CNS0095596	Whole white alabastrum(diploid) 3	90.229
	CNS0095597	Whole white alabastrum(diploid) 4	90.996
	CNS0095598	Silvery flower (diploied) 1	45.203
	CNS0095599	Silvery flower (diploied) 2	37.435
	CNS0095600	Silvery flower (diploied) 3	89.701
	CNS0095601	Golden flower (diploid) 1	40.507
	CNS0095602	Golden flower (diploid) 2	76.398
	CNS0095603	Golden flower (diploid) 3	70.313
	CNS0095604	Slightly white alabastrum(tetraploid) 1	99.671
	CNS0095605	Slightly white alabastrum(tetraploid) 2	93.434
	CNS0095606	Slightly white alabastrum(tetraploid) 3	94.901
	CNS0095607	Whole white alabastrum(tetraploid) 1	99.358
	CNS0095608	Whole white alabastrum(tetraploid) 2	105.545
	CNS0095609	Whole white alabastrum(tetraploid) 3	111.989
	CNS0095610	Silvery flower (tetraploid) 1	119.844
	CNS0095611	Silvery flower (tetraploid) 2	101.846
	CNS0095612	Silvery flower (tetraploid) 3	115.765
	CNS0095613	Golden flower (tetraploid) 1	50.671
	CNS0095614	Golden flower (tetraploid) 2	85.189
	CNS0095615	Golden flower (tetraploid) 3	85.151
CRA001975	CRR073297	Stem 1	68.552
	CRR073298	Stem 2	64.130
	CRR073299	Stem 3	49.467
	CRR073300	Leaf 1	93.660
	CRR073301	Leaf 2	80.396
	CRR073302	Leaf 3	61.143
	CRR073303	Juvenile bud 1	71.867
	CRR073304	Juvenile bud 2	53.638
	CRR073305	Juvenile bud 3	59.575
	CRR073306	Third green 1	40.746
	CRR073307	Third green 2	33.481
	CRR073308	Third green 3	41.764
	CRR073309	Second white 1	53.441
	CRR073310	Second white 2	63.556
	CRR073311	Second white 3	49.876
	CRR073312	Silver flowering 1	42.675
	CRR073313	Silver flowering 2	42.578
	CRR073314	Silver flowering 3	37.417
	CRR073315	Gold flowering 1	29.816
	CRR073316	Gold flowering 2	29.518
	CRR073317	Gold flowering 3	29.415
	CRR073318	Tawny withering 1	42.328
	CRR073319	Tawny withering 2	42.328
	CRR073320	Tawny withering 3	39.154