Gene detail

Detail information of GWHGAAZE033098

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009589735.1	0	PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
COG	YP_006439308.1	2E-24	putative transcriptional regulator, Crp/Fnr family
Swissprot	tr\|O65718\|CNGC2_ARATH	0	Cyclic nucleotide-gated ion channel 2
trEMBL	tr\|A0A067K612\|A0A067K612_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP27204.1}
TAIR10	AT5G15410.2	0	Cyclic nucleotide-regulated ion channel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	750296	754414	+
GWHAAZE00000094	mRNA	750296	754414	+
GWHAAZE00000094	exon	750296	750892	+
GWHAAZE00000094	exon	752087	752302	+
GWHAAZE00000094	exon	752494	752816	+
GWHAAZE00000094	exon	753022	753133	+
GWHAAZE00000094	exon	753211	753447	+
GWHAAZE00000094	exon	753580	753666	+
GWHAAZE00000094	exon	753929	754414	+
GWHAAZE00000094	CDS	750296	750892	+
GWHAAZE00000094	CDS	752087	752302	+
GWHAAZE00000094	CDS	752494	752816	+
GWHAAZE00000094	CDS	753022	753133	+
GWHAAZE00000094	CDS	753211	753447	+
GWHAAZE00000094	CDS	753580	753666	+
GWHAAZE00000094	CDS	753929	754414	+

Transcript Sequence
>GWHTAAZE033137 TGGTTCAGAATATTCCGGCGACCAAAAATTCAATTGGAGGGAAATGACCACACCGACGACAGTACTCATCCTTCAAACTCCGGCGAATGTTACGCGTGTACACAAGTGGGCCTCCCAGTTTTCCACTCAACAAGCTGCGACCGGGCCCACCAGCCCGAATGGGAAGCCTCGGCCGGAACTTCTCTAGTTCCCATTCATAACCGTCCGATCAACCACCGGAGATCCCCTATCCACGGTGTACTAGACCCGCGTAGCAAGCGCGTGCAAAGGTGGAACAGGTTGTTCTTACTGGCGCGTGGGATGTCACTCGCGGTGGACCCTCTCTTCTTCTACGCGCTGTCGGTTGGAAGAGGGGGGTCGCCGTGTTTGTATATGGACGGAGGGTTGACGGCGTTAGTGACGGGGTTAAGGACGTGCGTTGACGCCGTTCATTTGTGTCACATTTGGCTTCAGTTTCGACTGGCTTATGTTTCGAGGGAATCCATGGTTGTGGGGTGTGGGAAACTCGTGTGGGACTCACGTGCCATCGCTTCTCACTACGTGAGGTCTATTAAAGGGTTCTGGTTCGACGCCTTCGTCATTCTCCCCGTTCCGCAGGCTGTGTTTTGGTTAGTGGTGCCAAGATTGATAAGAGAAGAGGAGATAAAGCTCATAATGAACATACTTCTACTAATCTTTTTGTTCCAATTCCTCCCTAAAGTCTACCACAGCATTTGCTTAATGAGAAGTATGCAAAAGGTCACTGGCTATATCTTTGGCACGATTTGGTGGGGTTTTGGCCTTAATCTCATTGCCTATTTCTTAGCCTCTCATGTGGCAGGGGGATGCTGCTATATACTTGCAATACAACGAACTGCTTCATGCCTCCGGCAGCAGTGTGACCGGAAAAGTAGTTGTAACAACCTCTCTCTGTCTTGCTCTGAGGAGGTTTGTTACCAGTTTCTTTCGCTGGCAAGCACATTGGGAAACACATGTGGCGGCAACTCGACAACCGCAATGCTAAGAAAGCCTTTGTGTTTAGATGTTAATGGACCGTTCAGTTATGGCATCTACAAATGGGCTCTTCCAGTCATTTCTAGCAACTCCATCAATATCAAGATTCTTTATCCCATTTTTTGGGGCTTATATACCCTTAGCACTTTTGGGAATGACTTAGAACCCACAAGTCAGTGGTTGGAAGTGATTTTCAGCATATGTATTGTGTTGAGTGGTTTAATGCTCTTCACTCTGTTGATTGGAAATATTCAGGTATTCTTGCACACGGTAATGGCAAAAAAGAGAAACATGCAACTGAGATGCCGAGATCTAGAATGGTGGATGAGGCGGAGACAGTTACCATCTCAACTGCGACAAAGAGTTCGCCATTTTGAACGTCAGAGATGGGCTGCCATGGGTGGAGAAGACGAGATGGAATTGGTTAAGGATTTTCCAGAAGGACTTAGACGTGACATTAAGCGGTTTCTTTGCCTAGACCTCATAAAAAAGGTACCTCTGTTCCAAAGTTTGGATGATCTCATCCTTGATAACATATGTGACCGGGTTAATCCCCTCGTCTTCTCCAAAAATGAAAAGATCTTCAGAGAGGGAGATCCAGTATTGCGTATAGTTTTCATAGTTCGTGGACGCGTAAAAAGCAGCCAAAACCTCAGTAAAGGCATGGTAGCCACAAGCACACTAGAACCGGGTGGCTTTTTGGGTGACGAACTTCTTTCGTGGTGCCTTCGACGCCCATTTACGGACAGGCTTCCAGCATCTTCAGCGACATTTACTTGCATTGAACCAACCGAAGCATTTGGGCTTGATGCAAATAATCTCCGGTATATTAGTGACCACTTTCGGTACAAGTTTGCTAATGAGAGGCTAAAGAGGACGGCGCGATATTACTCGTCAAATTGGAGGACTTGGGGGGCTGTGAACATACAGTTGGCATGGCGGCGGTACCGGTTGAGGACTAGGAGGCCGGTGGATTGTATGGTGGAGAATGGTGGCAGCAAGCGGCGGCTCCAACACTATGCTGCAATTTTCATGTCTATTAGGCCACATGACCACTTTGAATGA

Network for GWHGAAZE033098

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	91	416	2.10E-09
PF00027.30	cNMP_binding	518	606	2.10E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.542
	SRR3591706	second leaf	4.159
	SRR3591707	mature leaf	1.731
	SRR3591708	Shoot apex	10.971
	SRR3591709	Stem	6.347
	SRR3591710	White floral bud	0.658
	SRR3591711	White flower	0.513
	SRR3591712	Green floral bud	0.345
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.254
	SRR8316896	Juvenile bud stage	1.687
	SRR8316897	Juvenile bud stage	1.167
	SRR8316894	Third green stage	0.683
	SRR8316900	Third green stage	0.214
	SRR8316901	Third green stage	0.418
	SRR8316898	Complete white stage	0.028
	SRR8316899	Complete white stage	1.012
	SRR8316903	Complete white stage	0.164
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.228
	SRR6706287	Light intensity 50%	0.366
	SRR6706288	Light intensity 20%	0.427
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.556
	CNS0095593	Slightly white alabastrum(diploid) 2	1.887
	CNS0095594	Slightly white alabastrum(diploid) 3	1.569
	CNS0095595	Whole white alabastrum(diploid) 2	1.938
	CNS0095596	Whole white alabastrum(diploid) 3	0.190
	CNS0095597	Whole white alabastrum(diploid) 4	1.339
	CNS0095598	Silvery flower (diploied) 1	3.900
	CNS0095599	Silvery flower (diploied) 2	7.322
	CNS0095600	Silvery flower (diploied) 3	1.189
	CNS0095601	Golden flower (diploid) 1	9.840
	CNS0095602	Golden flower (diploid) 2	3.351
	CNS0095603	Golden flower (diploid) 3	2.954
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.949
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.967
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.058
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.753
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.002
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.256
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.858
	CNS0095612	Silvery flower (tetraploid) 3	0.021
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.658
	CRR073298	Stem 2	0.181
	CRR073299	Stem 3	0.498
	CRR073300	Leaf 1	0.232
	CRR073301	Leaf 2	0.445
	CRR073302	Leaf 3	0.205
	CRR073303	Juvenile bud 1	0.070
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.128
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.078
	CRR073312	Silver flowering 1	0.310
	CRR073313	Silver flowering 2	0.117
	CRR073314	Silver flowering 3	0.300
	CRR073315	Gold flowering 1	1.113
	CRR073316	Gold flowering 2	2.379
	CRR073317	Gold flowering 3	1.151
	CRR073318	Tawny withering 1	2.061
	CRR073319	Tawny withering 2	4.717
	CRR073320	Tawny withering 3	1.972