Gene detail

Detail information of GWHGAAZE033093

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_003552554.1	PREDICTED: chaperone protein ClpB3, chloroplastic-like [Glycine max]
COG	YP_007121403.1	ATP-dependent chaperone ClpB
Swissprot	tr\|Q9LF37\|CLPB3_ARATH	Chaperone protein ClpB3, chloroplastic (Precursor)
trEMBL	tr\|I1N4I0\|I1N4I0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G49930.1}
TAIR10	AT5G15450.1	casein lytic proteinase B3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	647187	653083	+
GWHAAZE00000094	mRNA	647187	653083	+
GWHAAZE00000094	exon	647187	647435	+
GWHAAZE00000094	exon	648006	648224	+
GWHAAZE00000094	exon	648667	648904	+
GWHAAZE00000094	exon	649525	649720	+
GWHAAZE00000094	exon	649860	649914	+
GWHAAZE00000094	exon	650012	650162	+
GWHAAZE00000094	exon	650330	650662	+
GWHAAZE00000094	exon	650785	651050	+
GWHAAZE00000094	exon	651232	652158	+
GWHAAZE00000094	exon	652754	653083	+
GWHAAZE00000094	CDS	647187	647435	+
GWHAAZE00000094	CDS	648006	648224	+
GWHAAZE00000094	CDS	648667	648904	+
GWHAAZE00000094	CDS	649525	649720	+
GWHAAZE00000094	CDS	649860	649914	+
GWHAAZE00000094	CDS	650012	650162	+
GWHAAZE00000094	CDS	650330	650662	+
GWHAAZE00000094	CDS	650785	651050	+
GWHAAZE00000094	CDS	651232	652158	+
GWHAAZE00000094	CDS	652754	653083	+

Transcript Sequence
>GWHTAAZE033132 ATGGCGAACACGACGTCGTTATCAGGTGTCATCAACAATTGTGTTGCTGCTTCTTCGAGCTTTTGTAATCGGACTACTACTTTGTTTCCTCAGTCACCGCTGTCGGTAACCTTGTCGGCGAAACCTATAGCTCTCAAAAACCTGGAGTCGTTGAAATTGAAGAGCAATAATGTATTTCTCAAGGGAAGAGTTCGAAGGAAGAGTTACTCGAGCTCTTTTGTTGTTCGATGCGAAGCTTCAGATGGAAGGATTACTCAACAAGAGTTCACCGAAATGGCTTGGCAAGCAATAGTTTCTTCCCCCGAAGTGGCTAAAGACAATAAGCAGCAACTAGTGGAGACAGAGCATTTGATGAAGGCCCTGCTAGAGCAAAAGAATGGGCTTGCTCGACGGATCTTCTCAAAGGCTGGCGTGGATAATACACGTCTCCTTGAAGCTACTGATAAGTTCATTCAACGCCAACCAAAGGTGTATGGTGAGTCAGTTGCTTCAATGTTAGGGCGGGATCTCGAGGCTCTGGTGCAGCGAGCAAGGGAGTACAAGAAAGAGTATGGAGATTCCTTTGTGTCAGTTGAGCATTTAGTGCTCGGATTTCTGCAAGATAACCGATTTGGAAAGCAATTATTTAAGGATTTTCAGATTTCCCTGAAAACCTTAACGAATGCCATTCAAGCCATAAGGGGGAACCAAACAGTAATTGACCAAGATCCCGAGGGGAAGTATGAATCACTGGAGAAATATGGGAAAGATTTGACTGCCATGGCAAGGGCTGGAAAGCTTGACCCTGTTATAGGAAGAGATGATGAAATACGCAGATGCATCCAGATTCTGTCCAGGAGAACAAAGAACAATCCGGTGCTAATTGGTGAGCCAGGTGTTGGGAAAACTGCAATTTCGGAGGGGCTTGCCCAGAGAATTGTGCAAGGAGACGTCCCTCAAGCTTTAATGAATCGAAGATTGATATCCCTGGACATGGGTGCACTCATTGCTGGGGCAAAATACCGAGGAGAATTTGAGGATAGACTAAAGGCCGTGCTCAAGGAAGTAACAGAATCGGATGGGCAGACTATTCTTTTCATTGATGAGATCCACACAGTTGTTGGGGCAGGGGCCACTAATGGTGCAATGGATGCTGGCAATCTTTTGAAGCCCATGCTTGGCCGTGGAGAGCTGCGATGCATTGGAGCGACAACTTTGGATGAATATCGGAAATATATTGAGAAAGATCCGGCCTTGGAGCGCCGTTTCCAGCAAGTGTATGTTGATCAACCTACAGTGGAAGATACAATATCTATACTTCGTGGACTCCGTGAAAGATATGAACTGCATCATGGGGTCCGCATATCTGACAGTGCACTTGTTGAGGCTGCAATCCTCTCAGACCGATACATCAGTGGACGATTTTTACCTGACAAAGGTAATGCATTTGTGGTTTCAATTTCTATTGACTTGGTTGATGAAGCAGCTGCTAAGCTGAAAATGGAGATCACGTCGAAGCCGACTGCACTTGATGAGATCAATCGTGCAGTGTTAAAGCTAGAGATGGAGAGGCTCTCTCTTACGAATGATACTGATAAAGCTTCGAAGGACAGGTTGAATCGTCTTGAGTCAGAGTTGGCTCTCTTAAAGAAGAGACAAGTTGAACTCACTGACCAGTGGGAGCATGAGAAAAATGTCATGATGCGCCTACAATCAATCAAGGAAGAGATTGACAGGGTAAATCTTGAGATCCAGCAGGCAGAGAGGGAGTATGATCTTAACCGTGCAGCTGAATTAAAATATGGTAGCCTAAATTCTTTACAGCGTCAACTTGAAGATGCAGAGAAGGAGTTGGATGAATATATGAGATCGGGGAAGTCTATGCTTAGAGAAGAGGTTTCAGGTAACGATATTGCCGAAATTGTCAGTAAATGGACTGGCATTCCTGTTTCCAAGCTACAACAATCTGAGAGGGAGAAACTGTTGCATTTGGAGGAAGAACTACATAAACGTGTTGTGGGTCAAGATCCTGCAGTAAGATCCGTGGCCGAAGCTATCCAGCGATCTCGAGCAGGCCTCTCTGATCCTCACCGTCCGATTGCTAGTTTCATGTTCATGGGTCCAACAGGTGTGGGGAAAACCGAGCTAGCAAAGGCCCTCGCTTCGTATTTGTTCAACACCGAAGAGGCCCTTGTGCGGATTGATATGAGTGAGTACATGGAAAAACACGCCGTTTCAAGATTGATAGGAGCACCACCTGGTTACGTAGGGTATGAGGAAGGAGGACAATTGACAGAGATAGTCCGAAGGAGGCCATACGCGGTTATTTTGTTTGATGAGATTGAAAAGGCTCATTCAGATGTGTTCAATGTGTTCCTTCAAATATTGGACGATGGTAGAGTGACCGACTCACAGGGTCGCACGGTGAGTTTCACCAACACCGTCCTTATTATGACTTCGAATGTGGGTTCACAATACATACTAAATATGAATGAGGAGACTTCTCCGAAGGAGACGGCTTATGAAACTATAAAGCAAAGGGTAATGGATGCTGCAAGATCAGTTTTTCGTCCTGAGTTTATGAATCGAGTTGATGAGTACATAGTATTCCAGCCTCTTGACCGTGAGCAGATTAACAGCATTGTCAGGATACAGCTGGAAAGAGTACAAAAGAGGATAGCAGACAGGAAAATTAATATAAAAGTGACCGAGGCCGCTGTTGAACTCCTAGGAAGTCTTGGGTATGACCCAAATTACGGGGCTAGGCCGGTGAAGAGGGTGATCCAGCAGAATATTGAGAACGAGCTAGCAAAGGGCATCTTGAGAGGAGAGTTTAAGGAGGAAGACACTATTTTGATAGACACGGAAGTTGGCGCATTTTCCGGTGGCCAGCTGCCCCAGCAGAAGCTTGTGTTTAAAAGATTGAGTCCTGATTCAGGAACTGTAGATGAAAACAGAGAAGCCTTCTCACAGCAGAGAGTCTGA

Network for GWHGAAZE033093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02861.21	Clp_N	102	151	3.50E-14
PF02861.21	Clp_N	177	228	4.60E-12
PF00004.30	AAA	286	418	3.80E-13
PF17871.2	AAA_lid_9	425	535	3.30E-28
PF07724.15	AAA_2	691	859	4.30E-56
PF10431.10	ClpB_D2-small	866	945	6.80E-26

Protein Sequence

>GWHPAAZE033114
MANTTSLSGVINNCVAASSSFCNRTTTLFPQSPLSVTLSAKPIALKNLESLKLKSNNVFLKGRVRRKSYSSSFVVRCEASDGRITQQEFTEMAWQAIVSSPEVAKDNKQQLVETEHLMKALLEQKNGLARRIFSKAGVDNTRLLEATDKFIQRQPKVYGESVASMLGRDLEALVQRAREYKKEYGDSFVSVEHLVLGFLQDNRFGKQLFKDFQISLKTLTNAIQAIRGNQTVIDQDPEGKYESLEKYGKDLTAMARAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRRLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESDGQTILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPTVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKGNAFVVSISIDLVDEAAAKLKMEITSKPTALDEINRAVLKLEMERLSLTNDTDKASKDRLNRLESELALLKKRQVELTDQWEHEKNVMMRLQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNSLQRQLEDAEKELDEYMRSGKSMLREEVSGNDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVRSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYLFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVLIMTSNVGSQYILNMNEETSPKETAYETIKQRVMDAARSVFRPEFMNRVDEYIVFQPLDREQINSIVRIQLERVQKRIADRKINIKVTEAAVELLGSLGYDPNYGARPVKRVIQQNIENELAKGILRGEFKEEDTILIDTEVGAFSGGQLPQQKLVFKRLSPDSGTVDENREAFSQQRV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03695	clpB	Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0019538	biological_process	protein metabolic process
GO:0009408	biological_process	response to heat
GO:0042026	biological_process	protein refolding
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.248
	SRR3591706	second leaf	19.798
	SRR3591707	mature leaf	36.601
	SRR3591708	Shoot apex	23.460
	SRR3591709	Stem	49.008
	SRR3591710	White floral bud	9.005
	SRR3591711	White flower	14.178
	SRR3591712	Green floral bud	17.581
	SRR3591713	Yellow flower	5.116
SRP173429	SRR8316895	Juvenile bud stage	52.524
	SRR8316896	Juvenile bud stage	157.254
	SRR8316897	Juvenile bud stage	46.987
	SRR8316894	Third green stage	14.573
	SRR8316900	Third green stage	35.507
	SRR8316901	Third green stage	34.369
	SRR8316898	Complete white stage	2.944
	SRR8316899	Complete white stage	21.010
	SRR8316903	Complete white stage	7.831
	SRR8316902	Silver flowering stage	5.113
	SRR8316904	Silver flowering stage	6.822
	SRR8316905	Silver flowering stage	3.551
	SRR8316906	Gold flowering stage	22.816
	SRR8316907	Gold flowering stage	20.224
	SRR8316908	Gold flowering stage	17.056
SRP132670	SRR6706286	Control	36.969
	SRR6706287	Light intensity 50%	31.202
	SRR6706288	Light intensity 20%	30.002
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.275
	CNS0095593	Slightly white alabastrum(diploid) 2	14.785
	CNS0095594	Slightly white alabastrum(diploid) 3	26.194
	CNS0095595	Whole white alabastrum(diploid) 2	14.689
	CNS0095596	Whole white alabastrum(diploid) 3	16.666
	CNS0095597	Whole white alabastrum(diploid) 4	13.201
	CNS0095598	Silvery flower (diploied) 1	25.603
	CNS0095599	Silvery flower (diploied) 2	126.184
	CNS0095600	Silvery flower (diploied) 3	59.545
	CNS0095601	Golden flower (diploid) 1	215.373
	CNS0095602	Golden flower (diploid) 2	92.717
	CNS0095603	Golden flower (diploid) 3	90.694
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.754
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.109
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.795
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.581
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.630
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.853
	CNS0095610	Silvery flower (tetraploid) 1	35.977
	CNS0095611	Silvery flower (tetraploid) 2	47.610
	CNS0095612	Silvery flower (tetraploid) 3	22.894
	CNS0095613	Golden flower (tetraploid) 1	27.617
	CNS0095614	Golden flower (tetraploid) 2	44.386
	CNS0095615	Golden flower (tetraploid) 3	15.688
CRA001975	CRR073297	Stem 1	22.494
	CRR073298	Stem 2	20.459
	CRR073299	Stem 3	16.416
	CRR073300	Leaf 1	21.127
	CRR073301	Leaf 2	15.169
	CRR073302	Leaf 3	11.625
	CRR073303	Juvenile bud 1	8.703
	CRR073304	Juvenile bud 2	5.118
	CRR073305	Juvenile bud 3	8.543
	CRR073306	Third green 1	1.436
	CRR073307	Third green 2	1.194
	CRR073308	Third green 3	1.320
	CRR073309	Second white 1	2.072
	CRR073310	Second white 2	2.470
	CRR073311	Second white 3	2.647
	CRR073312	Silver flowering 1	2.623
	CRR073313	Silver flowering 2	1.785
	CRR073314	Silver flowering 3	2.644
	CRR073315	Gold flowering 1	27.991
	CRR073316	Gold flowering 2	42.605
	CRR073317	Gold flowering 3	17.114
	CRR073318	Tawny withering 1	8.537
	CRR073319	Tawny withering 2	8.067
	CRR073320	Tawny withering 3	10.407