Detail information of GWHGAAZE033083


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010661137.10PREDICTED: nipped-B-like protein isoform X3 [Vitis vinifera]
trEMBLtr|D7SXK2|D7SXK2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI22299.3}
TAIR10AT5G15540.20PHD finger family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene454583465672-
GWHAAZE00000094mRNA454583465672-
GWHAAZE00000094exon454583454675-
GWHAAZE00000094exon455264455389-
GWHAAZE00000094exon455473455565-
GWHAAZE00000094exon456011456377-
GWHAAZE00000094exon456467456754-
GWHAAZE00000094exon456848456981-
GWHAAZE00000094exon457106457339-
GWHAAZE00000094exon457488457592-
GWHAAZE00000094exon457672457839-
GWHAAZE00000094exon458227458335-
GWHAAZE00000094exon460117460286-
GWHAAZE00000094exon460845460997-
GWHAAZE00000094exon461269461322-
GWHAAZE00000094exon461408461566-
GWHAAZE00000094exon462071462238-
GWHAAZE00000094exon462339462497-
GWHAAZE00000094exon462610462660-
GWHAAZE00000094exon462737462947-
GWHAAZE00000094exon463257463786-
GWHAAZE00000094exon463871464641-
GWHAAZE00000094exon464750464815-
GWHAAZE00000094exon464942465058-
GWHAAZE00000094exon465208465315-
GWHAAZE00000094exon465664465672-
GWHAAZE00000094CDS465664465672-
GWHAAZE00000094CDS465208465315-
GWHAAZE00000094CDS464942465058-
GWHAAZE00000094CDS464750464815-
GWHAAZE00000094CDS463871464641-
GWHAAZE00000094CDS463257463786-
GWHAAZE00000094CDS462737462947-
GWHAAZE00000094CDS462610462660-
GWHAAZE00000094CDS462339462497-
GWHAAZE00000094CDS462071462238-
GWHAAZE00000094CDS461408461566-
GWHAAZE00000094CDS461269461322-
GWHAAZE00000094CDS460845460997-
GWHAAZE00000094CDS460117460286-
GWHAAZE00000094CDS458227458335-
GWHAAZE00000094CDS457672457839-
GWHAAZE00000094CDS457488457592-
GWHAAZE00000094CDS457106457339-
GWHAAZE00000094CDS456848456981-
GWHAAZE00000094CDS456467456754-
GWHAAZE00000094CDS456011456377-
GWHAAZE00000094CDS455473455565-
GWHAAZE00000094CDS455264455389-
GWHAAZE00000094CDS454583454675-
Transcript Sequence

Network for GWHGAAZE033083

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD4234706.50E-08
PF12765.8Cohesin_HEAT6206614.20E-12
PF12830.8Nipped-B_C108612828.70E-55
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
K06672SCC2, NIPBL Cell cycle - yeast map04111

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.240
SRR3591706second leaf8.613
SRR3591707mature leaf12.592
SRR3591708Shoot apex12.182
SRR3591709Stem11.274
SRR3591710White floral bud10.946
SRR3591711White flower15.744
SRR3591712Green floral bud8.639
SRR3591713Yellow flower12.990
SRP173429 SRR8316895Juvenile bud stage 6.060
SRR8316896Juvenile bud stage 7.194
SRR8316897Juvenile bud stage 3.134
SRR8316894Third green stage 3.241
SRR8316900Third green stage 5.850
SRR8316901Third green stage 5.775
SRR8316898Complete white stage 2.087
SRR8316899Complete white stage 9.289
SRR8316903Complete white stage 5.788
SRR8316902Silver flowering stage3.732
SRR8316904Silver flowering stage7.327
SRR8316905Silver flowering stage2.587
SRR8316906Gold flowering stage 8.654
SRR8316907Gold flowering stage 9.526
SRR8316908Gold flowering stage 8.410
SRP132670SRR6706286Control4.051
SRR6706287Light intensity 50%4.421
SRR6706288Light intensity 20%4.921
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.992
CNS0095593Slightly white alabastrum(diploid) 22.818
CNS0095594Slightly white alabastrum(diploid) 33.089
CNS0095595Whole white alabastrum(diploid) 22.839
CNS0095596Whole white alabastrum(diploid) 31.774
CNS0095597Whole white alabastrum(diploid) 42.641
CNS0095598Silvery flower (diploied) 16.667
CNS0095599Silvery flower (diploied) 25.469
CNS0095600Silvery flower (diploied) 310.198
CNS0095601Golden flower (diploid) 15.516
CNS0095602Golden flower (diploid) 210.997
CNS0095603Golden flower (diploid) 310.746
CNS0095604Slightly white alabastrum(tetraploid) 13.957
CNS0095605Slightly white alabastrum(tetraploid) 22.524
CNS0095606Slightly white alabastrum(tetraploid) 39.601
CNS0095607Whole white alabastrum(tetraploid) 12.719
CNS0095608Whole white alabastrum(tetraploid) 21.411
CNS0095609Whole white alabastrum(tetraploid) 35.202
CNS0095610Silvery flower (tetraploid) 19.509
CNS0095611Silvery flower (tetraploid) 29.239
CNS0095612Silvery flower (tetraploid) 37.166
CNS0095613Golden flower (tetraploid) 14.554
CNS0095614Golden flower (tetraploid) 26.076
CNS0095615Golden flower (tetraploid) 39.716
CRA001975CRR073297Stem 18.284
CRR073298Stem 27.363
CRR073299Stem 34.886
CRR073300Leaf 15.978
CRR073301Leaf 24.991
CRR073302Leaf 33.334
CRR073303Juvenile bud 13.369
CRR073304Juvenile bud 22.080
CRR073305Juvenile bud 34.944
CRR073306Third green 11.344
CRR073307Third green 20.800
CRR073308Third green 31.695
CRR073309Second white 10.915
CRR073310Second white 22.196
CRR073311Second white 33.341
CRR073312Silver flowering 12.464
CRR073313Silver flowering 22.670
CRR073314Silver flowering 32.378
CRR073315Gold flowering 12.508
CRR073316Gold flowering 27.159
CRR073317Gold flowering 32.175
CRR073318Tawny withering 15.177
CRR073319Tawny withering 25.121
CRR073320Tawny withering 34.301