Gene detail

Detail information of GWHGAAZE033072

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAL07518.1	7.56713E-62	RNA-binding protein precursor [Nicotiana tabacum]
COG	YP_003267833.1	2E-23	RNP-1 like RNA-binding protein
Swissprot	tr\|Q9FNR1\|RBG3_ARATH	2E-46	Glycine-rich RNA-binding protein 3, mitochondrial (Precursor)
trEMBL	tr\|Q941H9\|Q941H9_TOBAC	3E-62	RNA-binding protein {ECO:0000313\|EMBL:AAL07518.1} (Precursor)
TAIR10	AT5G61030.1	5E-34	glycine-rich RNA-binding protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	336441	338523	+
GWHAAZE00000094	mRNA	336441	338523	+
GWHAAZE00000094	exon	336441	336520	+
GWHAAZE00000094	exon	336608	336642	+
GWHAAZE00000094	exon	336725	336868	+
GWHAAZE00000094	exon	336948	337016	+
GWHAAZE00000094	exon	337388	337494	+
GWHAAZE00000094	exon	338008	338523	+
GWHAAZE00000094	CDS	336441	336520	+
GWHAAZE00000094	CDS	336608	336642	+
GWHAAZE00000094	CDS	336725	336868	+
GWHAAZE00000094	CDS	336948	337016	+
GWHAAZE00000094	CDS	337388	337494	+
GWHAAZE00000094	CDS	338008	338523	+

Transcript Sequence
>GWHTAAZE033111 ATGTATGTGACAATACTTTGTATGAAGATGCCTGCTAACTTTGCTTGGATTTTATGCCATAAGCATTATGTTGGCATCAGGTTACCCAATATCAAGCTTGCTGTAAGAAGATATGGTTCAAAGATGGCTTTTGTCAATAGAATTGGCAGTATACTTAAACAGGCAGGGAGCAAGCATGTCAATGCGGGTTTAACTGCCTCTAATTCATCGGTTTACCAGGCAATAAGATGCATGTCATCTTCAAAGCTCTTTGTCGGAGGACTATCATATGGCACCGATGAAATTAGTTTGAGAGAAGCTTTTGGGCAATATGGGCAAGTGGTTGAAGCTAGGGTCATCATGGATCGTGACACCGGTAGGTCCAGGGGCTTTGGCTTTGTTAGTTATACATCAAGTGAAGAGGCTTCTAGTGCTGCCCAAGCCATGGACGGCCAGGATCTTCAAGGCCGAAGGGTAAGGGTCAGTTTCGCTACAGAGAAGCCTCGTGTTGGTGGATTTGGTGGGGGATATGGAGGCGGCGGTTATGGAGGTGGTAACAGCTATAGCAGTGGAGGGAGCGGATATGGTGGCGCAAACTATGGAGCTGCTGGTGGCAGCAATTACAGTGGTGGAATGTCTGGTGGCGGAAACTATGGAAGTTCTGGCAGCAGCAGTTATGGTGGCGGAAACTATGGGGAGAGTCTGGTGGCGGAAACTACGGAAGTTCTGGCAGCGGCAATTATGGTGGTGGAAACTATGGAAGTTCTGGAGGTGGCAGTTACGGTGGTGGAAGTGGCAGTGGTTATGGTACTGGTGTTAGTGGCAACAGTGGACATTACAGTGTTTCTGGTGGCAGTGAGAACTACAACAGTGGTGGTCCTGTCGGCAGCGGCGGCTTTTCTGGTCCTGGGTATGGTGGGACCACCGGGGCACCAAGCATTGGTGGTGAAGAAAAGTTGGGCAGCTCGATAG

Network for GWHGAAZE033072

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	83	153	3.90E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.502
	SRR3591706	second leaf	12.433
	SRR3591707	mature leaf	25.756
	SRR3591708	Shoot apex	20.961
	SRR3591709	Stem	27.165
	SRR3591710	White floral bud	15.543
	SRR3591711	White flower	30.249
	SRR3591712	Green floral bud	24.753
	SRR3591713	Yellow flower	22.054
SRP173429	SRR8316895	Juvenile bud stage	49.179
	SRR8316896	Juvenile bud stage	102.038
	SRR8316897	Juvenile bud stage	42.945
	SRR8316894	Third green stage	20.621
	SRR8316900	Third green stage	45.594
	SRR8316901	Third green stage	42.376
	SRR8316898	Complete white stage	8.203
	SRR8316899	Complete white stage	32.618
	SRR8316903	Complete white stage	14.280
	SRR8316902	Silver flowering stage	9.075
	SRR8316904	Silver flowering stage	7.617
	SRR8316905	Silver flowering stage	5.276
	SRR8316906	Gold flowering stage	18.847
	SRR8316907	Gold flowering stage	22.914
	SRR8316908	Gold flowering stage	31.418
SRP132670	SRR6706286	Control	63.886
	SRR6706287	Light intensity 50%	58.176
	SRR6706288	Light intensity 20%	56.004
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	77.497
	CNS0095593	Slightly white alabastrum(diploid) 2	58.014
	CNS0095594	Slightly white alabastrum(diploid) 3	91.424
	CNS0095595	Whole white alabastrum(diploid) 2	40.634
	CNS0095596	Whole white alabastrum(diploid) 3	45.166
	CNS0095597	Whole white alabastrum(diploid) 4	33.048
	CNS0095598	Silvery flower (diploied) 1	32.256
	CNS0095599	Silvery flower (diploied) 2	62.835
	CNS0095600	Silvery flower (diploied) 3	30.744
	CNS0095601	Golden flower (diploid) 1	79.789
	CNS0095602	Golden flower (diploid) 2	29.888
	CNS0095603	Golden flower (diploid) 3	28.448
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.908
	CNS0095605	Slightly white alabastrum(tetraploid) 2	76.786
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.712
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.933
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.928
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.675
	CNS0095610	Silvery flower (tetraploid) 1	83.381
	CNS0095611	Silvery flower (tetraploid) 2	52.378
	CNS0095612	Silvery flower (tetraploid) 3	39.435
	CNS0095613	Golden flower (tetraploid) 1	34.772
	CNS0095614	Golden flower (tetraploid) 2	57.440
	CNS0095615	Golden flower (tetraploid) 3	11.777
CRA001975	CRR073297	Stem 1	34.167
	CRR073298	Stem 2	34.075
	CRR073299	Stem 3	37.672
	CRR073300	Leaf 1	26.310
	CRR073301	Leaf 2	27.342
	CRR073302	Leaf 3	27.033
	CRR073303	Juvenile bud 1	30.147
	CRR073304	Juvenile bud 2	24.728
	CRR073305	Juvenile bud 3	32.740
	CRR073306	Third green 1	5.278
	CRR073307	Third green 2	4.765
	CRR073308	Third green 3	5.520
	CRR073309	Second white 1	10.074
	CRR073310	Second white 2	4.115
	CRR073311	Second white 3	1.742
	CRR073312	Silver flowering 1	3.094
	CRR073313	Silver flowering 2	2.345
	CRR073314	Silver flowering 3	1.221
	CRR073315	Gold flowering 1	17.384
	CRR073316	Gold flowering 2	23.576
	CRR073317	Gold flowering 3	16.549
	CRR073318	Tawny withering 1	19.922
	CRR073319	Tawny withering 2	16.137
	CRR073320	Tawny withering 3	11.919