Gene detail

Detail information of GWHGAAZE033069

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011098750.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Sesamum indicum]
COG	YP_001192956.1	5E-41	two component regulator
Swissprot	tr\|Q9S7I6\|RPK2_ARATH	0	LRR receptor-like serine/threonine-protein kinase RPK2 (Precursor)
trEMBL	tr\|F8WS91\|F8WS91_SOLPE	0	Leucine rich repeat receptor protein kinase 2 {ECO:0000313\|EMBL:BAK52398.1}
TAIR10	AT3G02130.1	0	receptor-like protein kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	304931	309732	-
GWHAAZE00000094	mRNA	304931	309732	-
GWHAAZE00000094	exon	304931	305162	-
GWHAAZE00000094	exon	305316	305416	-
GWHAAZE00000094	exon	305902	305958	-
GWHAAZE00000094	exon	306448	306587	-
GWHAAZE00000094	exon	306864	309732	-
GWHAAZE00000094	CDS	306864	309732	-
GWHAAZE00000094	CDS	306448	306587	-
GWHAAZE00000094	CDS	305902	305958	-
GWHAAZE00000094	CDS	305316	305416	-
GWHAAZE00000094	CDS	304931	305162	-

Transcript Sequence
>GWHTAAZE033108 ATGGGTCGTTCTTATTCTATCAAATGGTACTACCGTCTTCACAAACCCTTAACCCTGTTGATTCTCTTCTGGGTCTACTTTTCTGCAGCCGATTTGGACAAATCGGCTCTCTTGGAGTTCAAGGCTTCACTTTCAGACCCATATGGAGTTCTTGTGACCTGGAATTTAAAGAATTCTGATCACTGTTCTTGGACCGGAGTCACTTGCGGTTCAGATTCTCGGGTGGTGGCTCTCAATATCACTGGTGGAGGTAATTCTGGGTCTTTTTTTTGTGGTGATTATGCTCAATTTCAATTATATGGATTTGGAATTAGGAGGTCTTGTTCAAACAGTAATGTAAAATTAGTGGGTGTGGTCTCACCTGCTATAGCCAAGCTTGAGGAACTTAGGGTTTTGTCACTCCCTTTCAATGATTTGAGTGGGGAACTTCCATCAGAAATTTGGGGCATGGAAAAGTTGGAGGTTCTTGATCTTGAAGGGAATTCAGTTACTGGCTCTCTACCGACTCGTTTCGGGGGTTTGAGGAACGTGAGGGTTCTTAATTTGGGGTTTAATAAGATTGTAGGAGAGATACCGAATTCGCTATCCAATTGTTTGGGTCTGCAAATCTTGAATTTAGCTGGGAATCGGGTTAACGGGTCGATACCAACGTTTTTTGGTGGGTTTAGGGATTTGAGGGGGTTTTATTTGTCGTTTAATCAACTCAGCGGGTCGATTCCGAATGAGATTGGGGACAATTGTGGGAAACTTGAACATCTCGAGCTTTCGGGTAATTTCTTGGTTGGTGTGCTTCCAAGCAGTTTGGGTAATTGTAGTGCACTGCGTTCACTTCAGTTGTATTCCAATATGTTGGAGGAGGCTATTCCAGTTGAATTTGGCCGGCTTAGTAAGCTTGAAGTTCTCGATGTTTCGAGGAACAGCCTCAGTGGTCCGATTCCTCCAGAGCTGGGAAATTGCTCCGAGTTATCGATCCTTGTTTTCTCTAATCTGTTTGACCCTCTTCCTAGTTCAAGTGGCGATCCTGAGTTAGAAAATTCCACTTCTACTCGTGATGAATATAATTTCTTCGAAGGTGAAGTCCCCATAGAGATTACTATGCTCCCAAAGCTTAGGATGTTATGGGCACCGAGGGCGACTTTGGAGGGAAGGTTACCCAGCAACTGGGGTGCTTGTACCAGATTGGAAATAGTGAACTTGGCCCAGAATTATTTCACCGGTGAAATATCCAAAGGGGTGAGCGGCTGCAAGAAGCTTCATTTTCTTGATTTGAGCTCAAATAGGCTTACCGGGGAGCTTGACGAGGAACTTGTGGTTCCTTGCATGACCCTGTTTGATGTGAGTGGTAATCTTCTCACTGGTTCAATTCCTGGATTTATTTACAGACCTTGTACTCGAATTCCGTCCTTCAATGGGAATCCTTTTGAATCCTATGATCCATCATCTGCATATATGTCATTCTTTTCATTTAGAACTCAAGTTCTATCCCTTTTGCCACTATTTGGAGATGGTGGTAATCTTGCAATTATTCACAACTTTGGTGGTAACAACTTCACTGGCACTTTCCCGCCGGTGCCGATTTCACCAGAGAGATTAGGGGAGCAGACTGTTTATGCATATCTGGCTGCTAAAAATAAGTTTACAGGTCCATTTCCGGGAGGGCTATTTGAAAAGTGCGACAAATTAAATGCTATGATTGTTAATATCAGTGGCAACGGATTATCGGGTCAAATTCCGGAGAACATTGGTGCAATGTGCAAATCTCTCAAACTTTTTGACGCTTCTGTTAATCAGATTATGGGGACGATTCCATCTAGTTTTGGTGATATGTTTTCTCTTGTTGCTCTTAATTTGAGCTGGAATTTGTTACAAGGTACAATCCCAAGCAGTCTCAGCCAGATAAAGGGTCTCAAATGTCTTTCTTTAGCCGGTAATAACTTGACCGGCTCGATCCCAACGAGCTTGAGACAGTTGCTTTCTCTAGAAATGCTCGAACTATCTTCAAACACACTCTCGGGTGAGATTCCAAACGATGTTGTGAACTTTAGGAACCTGACCGTTCTTCTCCTCAACAACAATAAGCTCTCCGGGCAGATTCCTTCTGGTTTGGCAAATGTAACGACGCTTTCGGCATTCAATGTTTCCTTCAATAACTTGTCTGGCCCACTTCCTCTGAATGGCAATTTGATGAAATGCAACAATGTTCTTGGGAACCCCTTTTTGCAGGACTGCCACTCGGTCTCGTTAACAGCTCAACCTTCGGATCAGCAGGGGAGGGTCAGCGATTCGCAAAACTATGCTGCTTCTACTCCATCAACAAGTGGGACCCAGAGCAGCAGGCATAATAACTTCAACTCGATCGAGATTGCTTCGATAACATCTGCATGTGCCATTGTATCGGTTCTGTTAGCTCTCATTGTCCTCTTCTTTTACACTCGAAAATGGAACCCCAACTCCAGAGTTAGTGGATCCGTTAGAAAAGAAGTTACCGTTTTCACCGACATAGGGATCCCGTTGACGTTTGAGAACGTAGTGCAAGCCACAGGGAGTTTCAACGCAAGCAACTGCATTGGGAATGGTGGATTCGGAGCGACCTACAAGGCTGAGATTTCCCCGGGTGTCCTTGTGGCTATAAAACGGCTTGCTGTTGGACGGTTCCAAGGGGTTCAACAGTTTGATGCGGAAATCAAGACCCTGGGTAGGCTCCGGCACCCCAATCTCGTGACCTTAATTGGCTACCACGCCAGTGAAACGGAAATGTTTCTCATATATAATTACTTGCCGGGTGGTAATTTGGAAAGATTTATCCAAGAACGGTCCACAAGGGCTGTAGACTGGAGAATACTACACAAGATCGCTTTGGATATATCGCCTCTTGATCCTTCGTTTTCTTCTTATGGCAATGGTTTTAATATTGTTGCTTGGGCATGTATGCTCCTTCGACAAGGACGTGCCAAAGAATTCTTCACTGCAGGGTTGTGGGATGCTGGGCCCCACGATGATTTGGTCGAGATTAATCATCAATCATCATACACGAGGGAAGAGTATTTAGACAGTTCAAATCTACAGAATCTGGAGGCACTTGGCGCTTTTTTTTATCTAAGACAACAACAGAACTACAAAAGAGCAACTAAAAAGCAGGGGGAGGGGAATAGCCACCCAGTTAAAAGGCCTAGCACGCACCAAAAGGCCTCCCGGACGGCCCAAGCTTCACTAACAAGAGGTGAAGAACAACGAATTAATCTGCCAATGCCATCAACAATGGAATCCGAGGAAGACCAGGCTAAAACTCCCACTGAAGCAAGCTCTGAAGCAAGGCTGAAACTGCCATCACAATTGATTTTGATCCGGTTTTTATTGGTGGAGAGTTCCAAGAAGGTAACTGACTGGGTAGAGAGCTAG

Network for GWHGAAZE033069

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	31	69	1.80E-12
PF13855.7	LRR_8	153	210	1.10E-06
PF13855.7	LRR_8	249	308	1.90E-08
PF07714.18	PK_Tyr_Ser-Thr	853	956	3.80E-12

Protein Sequence

>GWHPAAZE033090
MGRSYSIKWYYRLHKPLTLLILFWVYFSAADLDKSALLEFKASLSDPYGVLVTWNLKNSDHCSWTGVTCGSDSRVVALNITGGGNSGSFFCGDYAQFQLYGFGIRRSCSNSNVKLVGVVSPAIAKLEELRVLSLPFNDLSGELPSEIWGMEKLEVLDLEGNSVTGSLPTRFGGLRNVRVLNLGFNKIVGEIPNSLSNCLGLQILNLAGNRVNGSIPTFFGGFRDLRGFYLSFNQLSGSIPNEIGDNCGKLEHLELSGNFLVGVLPSSLGNCSALRSLQLYSNMLEEAIPVEFGRLSKLEVLDVSRNSLSGPIPPELGNCSELSILVFSNLFDPLPSSSGDPELENSTSTRDEYNFFEGEVPIEITMLPKLRMLWAPRATLEGRLPSNWGACTRLEIVNLAQNYFTGEISKGVSGCKKLHFLDLSSNRLTGELDEELVVPCMTLFDVSGNLLTGSIPGFIYRPCTRIPSFNGNPFESYDPSSAYMSFFSFRTQVLSLLPLFGDGGNLAIIHNFGGNNFTGTFPPVPISPERLGEQTVYAYLAAKNKFTGPFPGGLFEKCDKLNAMIVNISGNGLSGQIPENIGAMCKSLKLFDASVNQIMGTIPSSFGDMFSLVALNLSWNLLQGTIPSSLSQIKGLKCLSLAGNNLTGSIPTSLRQLLSLEMLELSSNTLSGEIPNDVVNFRNLTVLLLNNNKLSGQIPSGLANVTTLSAFNVSFNNLSGPLPLNGNLMKCNNVLGNPFLQDCHSVSLTAQPSDQQGRVSDSQNYAASTPSTSGTQSSRHNNFNSIEIASITSACAIVSVLLALIVLFFYTRKWNPNSRVSGSVRKEVTVFTDIGIPLTFENVVQATGSFNASNCIGNGGFGATYKAEISPGVLVAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLERFIQERSTRAVDWRILHKIALDISPLDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTAGLWDAGPHDDLVEINHQSSYTREEYLDSSNLQNLEALGAFFYLRQQQNYKRATKKQGEGNSHPVKRPSTHQKASRTAQASLTRGEEQRINLPMPSTMESEEDQAKTPTEASSEARLKLPSQLILIRFLLVESSKKVTDWVES

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.110
	SRR3591706	second leaf	16.455
	SRR3591707	mature leaf	23.341
	SRR3591708	Shoot apex	22.542
	SRR3591709	Stem	25.254
	SRR3591710	White floral bud	23.849
	SRR3591711	White flower	28.570
	SRR3591712	Green floral bud	19.023
	SRR3591713	Yellow flower	17.803
SRP173429	SRR8316895	Juvenile bud stage	14.739
	SRR8316896	Juvenile bud stage	14.137
	SRR8316897	Juvenile bud stage	10.085
	SRR8316894	Third green stage	6.812
	SRR8316900	Third green stage	13.138
	SRR8316901	Third green stage	13.599
	SRR8316898	Complete white stage	4.206
	SRR8316899	Complete white stage	25.394
	SRR8316903	Complete white stage	11.419
	SRR8316902	Silver flowering stage	5.668
	SRR8316904	Silver flowering stage	9.539
	SRR8316905	Silver flowering stage	4.132
	SRR8316906	Gold flowering stage	13.070
	SRR8316907	Gold flowering stage	11.671
	SRR8316908	Gold flowering stage	13.720
SRP132670	SRR6706286	Control	15.100
	SRR6706287	Light intensity 50%	16.902
	SRR6706288	Light intensity 20%	16.437
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.131
	CNS0095593	Slightly white alabastrum(diploid) 2	9.897
	CNS0095594	Slightly white alabastrum(diploid) 3	8.756
	CNS0095595	Whole white alabastrum(diploid) 2	7.320
	CNS0095596	Whole white alabastrum(diploid) 3	4.263
	CNS0095597	Whole white alabastrum(diploid) 4	6.256
	CNS0095598	Silvery flower (diploied) 1	16.068
	CNS0095599	Silvery flower (diploied) 2	14.263
	CNS0095600	Silvery flower (diploied) 3	21.546
	CNS0095601	Golden flower (diploid) 1	18.472
	CNS0095602	Golden flower (diploid) 2	28.198
	CNS0095603	Golden flower (diploid) 3	28.320
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.070
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.656
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.298
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.444
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.345
	CNS0095610	Silvery flower (tetraploid) 1	18.850
	CNS0095611	Silvery flower (tetraploid) 2	17.242
	CNS0095612	Silvery flower (tetraploid) 3	18.162
	CNS0095613	Golden flower (tetraploid) 1	8.832
	CNS0095614	Golden flower (tetraploid) 2	15.910
	CNS0095615	Golden flower (tetraploid) 3	19.148
CRA001975	CRR073297	Stem 1	25.303
	CRR073298	Stem 2	19.170
	CRR073299	Stem 3	19.690
	CRR073300	Leaf 1	27.047
	CRR073301	Leaf 2	26.068
	CRR073302	Leaf 3	18.566
	CRR073303	Juvenile bud 1	20.330
	CRR073304	Juvenile bud 2	16.364
	CRR073305	Juvenile bud 3	31.656
	CRR073306	Third green 1	21.432
	CRR073307	Third green 2	16.238
	CRR073308	Third green 3	21.105
	CRR073309	Second white 1	15.674
	CRR073310	Second white 2	16.170
	CRR073311	Second white 3	17.956
	CRR073312	Silver flowering 1	15.804
	CRR073313	Silver flowering 2	14.102
	CRR073314	Silver flowering 3	10.188
	CRR073315	Gold flowering 1	8.844
	CRR073316	Gold flowering 2	14.821
	CRR073317	Gold flowering 3	14.301
	CRR073318	Tawny withering 1	16.500
	CRR073319	Tawny withering 2	12.375
	CRR073320	Tawny withering 3	15.183