Detail information of GWHGAAZE032998


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007022622.11.9452E-98Nuclear transcription factor Y subunit C-2 isoform 1 [Theobroma cacao]
Swissprottr|Q8LCG7|NFYC2_ARATH7E-73Nuclear transcription factor Y subunit C-2
trEMBLtr|A0A061FB94|A0A061FB94_THECC7E-99Nuclear transcription factor Y subunit C-2 isoform 1 {ECO:0000313|EMBL:EOY14148.1}
TAIR10AT1G56170.24E-57nuclear factor Y, subunit C2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000081gene584497585222-
GWHAAZE00000081mRNA584497585222-
GWHAAZE00000081exon584497585222-
GWHAAZE00000081CDS584497585222-
Transcript Sequence

Network for GWHGAAZE032998

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00808.24CBFD_NFYB_HMF791426.10E-17
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YC

KEGG pathway

KO Enzyme pathway mapID
K08066NFYC, HAP5 Antigen processing and presentation map04612

Gene Ontology

GO term OntologyName
GO:0046982molecular_functionprotein heterodimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.654
SRR3591706second leaf1.671
SRR3591707mature leaf3.478
SRR3591708Shoot apex5.177
SRR3591709Stem0.789
SRR3591710White floral bud6.128
SRR3591711White flower8.545
SRR3591712Green floral bud7.072
SRR3591713Yellow flower8.022
SRP173429 SRR8316895Juvenile bud stage 0.283
SRR8316896Juvenile bud stage 0.014
SRR8316897Juvenile bud stage 0.074
SRR8316894Third green stage 0.076
SRR8316900Third green stage 0.102
SRR8316901Third green stage 0.282
SRR8316898Complete white stage 0.141
SRR8316899Complete white stage 0.007
SRR8316903Complete white stage 0.179
SRR8316902Silver flowering stage0.014
SRR8316904Silver flowering stage0.046
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.139
SRP132670SRR6706286Control0.533
SRR6706287Light intensity 50%0.270
SRR6706288Light intensity 20%0.270
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.201
CNS0095593Slightly white alabastrum(diploid) 20.612
CNS0095594Slightly white alabastrum(diploid) 30.456
CNS0095595Whole white alabastrum(diploid) 20.228
CNS0095596Whole white alabastrum(diploid) 30.050
CNS0095597Whole white alabastrum(diploid) 40.053
CNS0095598Silvery flower (diploied) 10.403
CNS0095599Silvery flower (diploied) 20.847
CNS0095600Silvery flower (diploied) 30.125
CNS0095601Golden flower (diploid) 10.949
CNS0095602Golden flower (diploid) 20.389
CNS0095603Golden flower (diploid) 30.325
CNS0095604Slightly white alabastrum(tetraploid) 10.381
CNS0095605Slightly white alabastrum(tetraploid) 20.223
CNS0095606Slightly white alabastrum(tetraploid) 30.516
CNS0095607Whole white alabastrum(tetraploid) 10.457
CNS0095608Whole white alabastrum(tetraploid) 20.019
CNS0095609Whole white alabastrum(tetraploid) 30.310
CNS0095610Silvery flower (tetraploid) 10.463
CNS0095611Silvery flower (tetraploid) 20.807
CNS0095612Silvery flower (tetraploid) 32.218
CNS0095613Golden flower (tetraploid) 10.976
CNS0095614Golden flower (tetraploid) 20.882
CNS0095615Golden flower (tetraploid) 30.863
CRA001975CRR073297Stem 10.552
CRR073298Stem 20.581
CRR073299Stem 30.425
CRR073300Leaf 10.509
CRR073301Leaf 20.654
CRR073302Leaf 30.531
CRR073303Juvenile bud 10.203
CRR073304Juvenile bud 20.143
CRR073305Juvenile bud 30.197
CRR073306Third green 10.000
CRR073307Third green 20.151
CRR073308Third green 30.000
CRR073309Second white 10.053
CRR073310Second white 20.108
CRR073311Second white 30.131
CRR073312Silver flowering 10.153
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.026
CRR073315Gold flowering 10.021
CRR073316Gold flowering 20.100
CRR073317Gold flowering 30.098
CRR073318Tawny withering 10.131
CRR073319Tawny withering 20.023
CRR073320Tawny withering 30.012