Detail information of GWHGAAZE032995


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007022622.11.76392E-98Nuclear transcription factor Y subunit C-2 isoform 1 [Theobroma cacao]
Swissprottr|Q8LCG7|NFYC2_ARATH6E-73Nuclear transcription factor Y subunit C-2
trEMBLtr|A0A061FB94|A0A061FB94_THECC7E-99Nuclear transcription factor Y subunit C-2 isoform 1 {ECO:0000313|EMBL:EOY14148.1}
TAIR10AT1G56170.24E-57nuclear factor Y, subunit C2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000081gene557932558657-
GWHAAZE00000081mRNA557932558657-
GWHAAZE00000081exon557932558657-
GWHAAZE00000081CDS557932558657-
Transcript Sequence

Network for GWHGAAZE032995

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00808.24CBFD_NFYB_HMF791426.10E-17
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YC

KEGG pathway

KO Enzyme pathway mapID
K08066NFYC, HAP5 Antigen processing and presentation map04612

Gene Ontology

GO term OntologyName
GO:0046982molecular_functionprotein heterodimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.722
SRR3591706second leaf1.860
SRR3591707mature leaf3.831
SRR3591708Shoot apex5.729
SRR3591709Stem0.694
SRR3591710White floral bud7.037
SRR3591711White flower9.931
SRR3591712Green floral bud7.955
SRR3591713Yellow flower8.291
SRP173429 SRR8316895Juvenile bud stage 0.287
SRR8316896Juvenile bud stage 0.038
SRR8316897Juvenile bud stage 0.061
SRR8316894Third green stage 0.085
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.281
SRR8316898Complete white stage 0.142
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.159
SRR8316902Silver flowering stage0.029
SRR8316904Silver flowering stage0.047
SRR8316905Silver flowering stage0.027
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.139
SRP132670SRR6706286Control0.613
SRR6706287Light intensity 50%0.349
SRR6706288Light intensity 20%0.271
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.161
CNS0095593Slightly white alabastrum(diploid) 20.385
CNS0095594Slightly white alabastrum(diploid) 30.154
CNS0095595Whole white alabastrum(diploid) 20.263
CNS0095596Whole white alabastrum(diploid) 30.168
CNS0095597Whole white alabastrum(diploid) 40.053
CNS0095598Silvery flower (diploied) 10.375
CNS0095599Silvery flower (diploied) 20.461
CNS0095600Silvery flower (diploied) 30.046
CNS0095601Golden flower (diploid) 10.525
CNS0095602Golden flower (diploid) 20.289
CNS0095603Golden flower (diploid) 30.353
CNS0095604Slightly white alabastrum(tetraploid) 10.328
CNS0095605Slightly white alabastrum(tetraploid) 20.364
CNS0095606Slightly white alabastrum(tetraploid) 30.526
CNS0095607Whole white alabastrum(tetraploid) 10.476
CNS0095608Whole white alabastrum(tetraploid) 20.048
CNS0095609Whole white alabastrum(tetraploid) 30.219
CNS0095610Silvery flower (tetraploid) 10.555
CNS0095611Silvery flower (tetraploid) 21.222
CNS0095612Silvery flower (tetraploid) 31.925
CNS0095613Golden flower (tetraploid) 11.120
CNS0095614Golden flower (tetraploid) 21.087
CNS0095615Golden flower (tetraploid) 30.556
CRA001975CRR073297Stem 10.407
CRR073298Stem 20.519
CRR073299Stem 30.307
CRR073300Leaf 10.745
CRR073301Leaf 20.542
CRR073302Leaf 30.468
CRR073303Juvenile bud 10.242
CRR073304Juvenile bud 20.096
CRR073305Juvenile bud 30.234
CRR073306Third green 10.080
CRR073307Third green 20.095
CRR073308Third green 30.005
CRR073309Second white 10.105
CRR073310Second white 20.051
CRR073311Second white 30.037
CRR073312Silver flowering 10.063
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.026
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.024
CRR073317Gold flowering 30.049
CRR073318Tawny withering 10.147
CRR073319Tawny withering 20.031
CRR073320Tawny withering 30.012