Gene detail

Detail information of GWHGAAZE032990

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010099313.1	4.774E-166	Alpha-1,4-glucan-protein synthase [UDP-forming] 2 [Morus notabilis]
COG	YP_003535748.1	5E-17	hypothetical protein HVO_1704
Swissprot	tr\|Q8RU27\|UPTG2_SOLTU	4E-166	Alpha-1,4-glucan-protein synthase [UDP-forming] 2
trEMBL	tr\|W9RHT6\|W9RHT6_9ROSA	2E-166	Alpha-1,4-glucan-protein synthase [UDP-forming] 2 {ECO:0000313\|EMBL:EXB77659.1}
TAIR10	AT5G15650.1	3E-130	reversibly glycosylated polypeptide 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000081	gene	479516	481379	+
GWHAAZE00000081	mRNA	479516	481379	+
GWHAAZE00000081	exon	479516	479620	+
GWHAAZE00000081	exon	480270	480520	+
GWHAAZE00000081	exon	480604	480772	+
GWHAAZE00000081	exon	481047	481379	+
GWHAAZE00000081	CDS	479516	479620	+
GWHAAZE00000081	CDS	480270	480520	+
GWHAAZE00000081	CDS	480604	480772	+
GWHAAZE00000081	CDS	481047	481379	+

Transcript Sequence
>GWHTAAZE033029 ATGGAACCTTATATCGTCCTTCTCCTACTCCTCTGTCTTTTCTTCTCCACCGGAAAACCCGACCTAGTTTCCGACAGAGCTGCCCTCCTCTCCCTCCGTAAATCTGTTGCTAAGGATCCATCTGGTAAAGACATCAATGCACTTGGACAGCACATCAAGAACCTTCTCTGCCCATCTACCCCCAATTTCTTCAACACTCTCTATGACCCTTATGCTGAGGGTGCAGATTTTGTTCGCGGGTATCCTTTTAGCCTTCGCGAGGGTGTTCCTACTGCTGTGTCTCATGGCCTCTGGCTCAACATCCCGGATTACGATGCACCCACACAGCTTGTCAAGCCAAGCGAGAGAAACACTAGGTATGTGAATGCAGTTATGACAATCCCGAAGGGCACTCTCTTTCCCATGTGCGGTATGAATCTGGCATTTGACCGTGACCTCATTGGCCCCGCAATGTACTTCGGACTCATGGGTGACGGTCAGCCAATTGGGCGCTACGACGATATGTGGGCCGGCTGGTGCGTTAAGGTGATATGCGACCATTTGGGGCTTGGGGTGAAGACAGGACTCCCCTATATCTGGCACAGCAAAGCAAGCAATCCATTTGTGAACCTTAAGAAAGAGTACAAAGGCATCTTTTGGCAAGAAGAGATAATCCCATTCTTCCAACAATCTGTTCTTCCAAAAGAGTGCACCACTGTTCAAGCTTGCTACATTGAACTGTCCAAGCAAGTTAAGGAAAAGCTCAGTCCTATAGACCCTTACTTCACCAAGCTCGCTGATGCCATGGTCACATGGATCCAGGCCTGGGATGAGCTCAACCCGCCTAAAGGTTCTGCCAAAATGGCCAATGGCAAGTGA

Network for GWHGAAZE032990

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03214.14	RGP	35	273	2.00E-125

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13379	RGP, UTM	Metabolic pathways	map01100
K13379	RGP, UTM	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.250
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.194
	SRR3591708	Shoot apex	0.419
	SRR3591709	Stem	1.102
	SRR3591710	White floral bud	54.985
	SRR3591711	White flower	1.612
	SRR3591712	Green floral bud	483.898
	SRR3591713	Yellow flower	0.398
SRP173429	SRR8316895	Juvenile bud stage	34.913
	SRR8316896	Juvenile bud stage	161.239
	SRR8316897	Juvenile bud stage	99.262
	SRR8316894	Third green stage	67.583
	SRR8316900	Third green stage	314.088
	SRR8316901	Third green stage	355.717
	SRR8316898	Complete white stage	0.342
	SRR8316899	Complete white stage	0.314
	SRR8316903	Complete white stage	0.446
	SRR8316902	Silver flowering stage	0.498
	SRR8316904	Silver flowering stage	0.440
	SRR8316905	Silver flowering stage	0.257
	SRR8316906	Gold flowering stage	0.094
	SRR8316907	Gold flowering stage	0.273
	SRR8316908	Gold flowering stage	0.100
SRP132670	SRR6706286	Control	127.259
	SRR6706287	Light intensity 50%	128.180
	SRR6706288	Light intensity 20%	115.726
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	220.839
	CNS0095593	Slightly white alabastrum(diploid) 2	144.607
	CNS0095594	Slightly white alabastrum(diploid) 3	265.278
	CNS0095595	Whole white alabastrum(diploid) 2	268.507
	CNS0095596	Whole white alabastrum(diploid) 3	351.879
	CNS0095597	Whole white alabastrum(diploid) 4	247.490
	CNS0095598	Silvery flower (diploied) 1	0.859
	CNS0095599	Silvery flower (diploied) 2	1.200
	CNS0095600	Silvery flower (diploied) 3	0.378
	CNS0095601	Golden flower (diploid) 1	0.211
	CNS0095602	Golden flower (diploid) 2	0.496
	CNS0095603	Golden flower (diploid) 3	0.231
	CNS0095604	Slightly white alabastrum(tetraploid) 1	531.768
	CNS0095605	Slightly white alabastrum(tetraploid) 2	531.279
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.726
	CNS0095607	Whole white alabastrum(tetraploid) 1	821.935
	CNS0095608	Whole white alabastrum(tetraploid) 2	881.276
	CNS0095609	Whole white alabastrum(tetraploid) 3	583.711
	CNS0095610	Silvery flower (tetraploid) 1	0.656
	CNS0095611	Silvery flower (tetraploid) 2	1.421
	CNS0095612	Silvery flower (tetraploid) 3	7.137
	CNS0095613	Golden flower (tetraploid) 1	0.803
	CNS0095614	Golden flower (tetraploid) 2	0.507
	CNS0095615	Golden flower (tetraploid) 3	3.677
CRA001975	CRR073297	Stem 1	70.982
	CRR073298	Stem 2	85.808
	CRR073299	Stem 3	57.234
	CRR073300	Leaf 1	157.350
	CRR073301	Leaf 2	162.325
	CRR073302	Leaf 3	141.885
	CRR073303	Juvenile bud 1	137.950
	CRR073304	Juvenile bud 2	168.807
	CRR073305	Juvenile bud 3	0.762
	CRR073306	Third green 1	5.322
	CRR073307	Third green 2	5.814
	CRR073308	Third green 3	8.073
	CRR073309	Second white 1	0.129
	CRR073310	Second white 2	0.873
	CRR073311	Second white 3	1.283
	CRR073312	Silver flowering 1	4.088
	CRR073313	Silver flowering 2	7.198
	CRR073314	Silver flowering 3	4.657
	CRR073315	Gold flowering 1	8.141
	CRR073316	Gold flowering 2	0.608
	CRR073317	Gold flowering 3	2.983
	CRR073318	Tawny withering 1	6.805
	CRR073319	Tawny withering 2	4.105
	CRR073320	Tawny withering 3	6.649