Detail information of GWHGAAZE032954


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAY89375.11.07794E-52ADP glucose pyrophosphorylase small subunit [Nicotiana langsdorffii x Nicotiana sanderae]
COGYP_007098568.11E-31glucose-1-phosphate adenylyltransferase
Swissprottr|P52417|GLGS2_VICFA4E-52Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic (Precursor)
trEMBLtr|Q1L5W7|Q1L5W7_NICLS4E-53ADP glucose pyrophosphorylase small subunit {ECO:0000313|EMBL:AAY89375.1} (Fragment)
TAIR10AT5G48300.13E-41ADP glucose pyrophosphorylase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000073gene2222424025+
GWHAAZE00000073mRNA2222424025+
GWHAAZE00000073exon2222422343+
GWHAAZE00000073exon2246422562+
GWHAAZE00000073exon2269722815+
GWHAAZE00000073exon2372724025+
GWHAAZE00000073CDS2222422343+
GWHAAZE00000073CDS2246422562+
GWHAAZE00000073CDS2269722813+
GWHAAZE00000073three_prime_UTR2281422815+
GWHAAZE00000073three_prime_UTR2372724025+
Transcript Sequence

Network for GWHGAAZE032954

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00975glgC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Amino sugar and nucleotide sugar metabolismmap00520
Biofilm formation - Escherichia colimap02026

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.608
SRR3591706second leaf33.755
SRR3591707mature leaf36.839
SRR3591708Shoot apex16.921
SRR3591709Stem46.697
SRR3591710White floral bud6.015
SRR3591711White flower1.817
SRR3591712Green floral bud6.716
SRR3591713Yellow flower2.163
SRP173429 SRR8316895Juvenile bud stage 7.241
SRR8316896Juvenile bud stage 10.070
SRR8316897Juvenile bud stage 4.433
SRR8316894Third green stage 3.731
SRR8316900Third green stage 8.645
SRR8316901Third green stage 8.766
SRR8316898Complete white stage 1.690
SRR8316899Complete white stage 13.162
SRR8316903Complete white stage 2.857
SRR8316902Silver flowering stage2.833
SRR8316904Silver flowering stage3.234
SRR8316905Silver flowering stage1.372
SRR8316906Gold flowering stage 3.002
SRR8316907Gold flowering stage 2.423
SRR8316908Gold flowering stage 5.651
SRP132670SRR6706286Control0.477
SRR6706287Light intensity 50%1.064
SRR6706288Light intensity 20%1.399
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.722
CNS0095593Slightly white alabastrum(diploid) 214.567
CNS0095594Slightly white alabastrum(diploid) 317.293
CNS0095595Whole white alabastrum(diploid) 28.981
CNS0095596Whole white alabastrum(diploid) 39.911
CNS0095597Whole white alabastrum(diploid) 48.821
CNS0095598Silvery flower (diploied) 113.638
CNS0095599Silvery flower (diploied) 217.337
CNS0095600Silvery flower (diploied) 34.673
CNS0095601Golden flower (diploid) 115.892
CNS0095602Golden flower (diploid) 28.080
CNS0095603Golden flower (diploid) 35.373
CNS0095604Slightly white alabastrum(tetraploid) 14.037
CNS0095605Slightly white alabastrum(tetraploid) 24.131
CNS0095606Slightly white alabastrum(tetraploid) 33.525
CNS0095607Whole white alabastrum(tetraploid) 14.323
CNS0095608Whole white alabastrum(tetraploid) 24.487
CNS0095609Whole white alabastrum(tetraploid) 32.319
CNS0095610Silvery flower (tetraploid) 11.729
CNS0095611Silvery flower (tetraploid) 21.817
CNS0095612Silvery flower (tetraploid) 30.844
CNS0095613Golden flower (tetraploid) 11.401
CNS0095614Golden flower (tetraploid) 21.729
CNS0095615Golden flower (tetraploid) 30.398
CRA001975CRR073297Stem 13.025
CRR073298Stem 22.854
CRR073299Stem 32.380
CRR073300Leaf 11.192
CRR073301Leaf 20.714
CRR073302Leaf 31.834
CRR073303Juvenile bud 11.934
CRR073304Juvenile bud 22.077
CRR073305Juvenile bud 31.397
CRR073306Third green 10.556
CRR073307Third green 20.297
CRR073308Third green 30.220
CRR073309Second white 10.355
CRR073310Second white 21.495
CRR073311Second white 30.455
CRR073312Silver flowering 11.350
CRR073313Silver flowering 21.519
CRR073314Silver flowering 30.428
CRR073315Gold flowering 14.139
CRR073316Gold flowering 24.116
CRR073317Gold flowering 32.021
CRR073318Tawny withering 13.179
CRR073319Tawny withering 22.014
CRR073320Tawny withering 30.841