Gene detail

Detail information of GWHGAAZE032879

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006656876.1	0	PREDICTED: protein NSP-INTERACTING KINASE 1-like [Oryza brachyantha]
COG	YP_004775215.1	7E-19	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LFS4\|NIK1_ARATH	0	Protein NSP-INTERACTING KINASE 1 (Precursor)
trEMBL	tr\|D7SMJ9\|D7SMJ9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16897.3}
TAIR10	AT5G16000.1	1E-153	NSP-interacting kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000056	gene	59512	63543	-
GWHAAZE00000056	mRNA	59512	63543	-
GWHAAZE00000056	exon	59512	59832	-
GWHAAZE00000056	exon	60458	60600	-
GWHAAZE00000056	exon	61053	61394	-
GWHAAZE00000056	exon	61574	61723	-
GWHAAZE00000056	exon	62092	62189	-
GWHAAZE00000056	exon	62275	62337	-
GWHAAZE00000056	exon	62430	62501	-
GWHAAZE00000056	exon	62605	62748	-
GWHAAZE00000056	exon	63007	63078	-
GWHAAZE00000056	exon	63221	63353	-
GWHAAZE00000056	exon	63450	63543	-
GWHAAZE00000056	CDS	63450	63543	-
GWHAAZE00000056	CDS	63221	63353	-
GWHAAZE00000056	CDS	63007	63078	-
GWHAAZE00000056	CDS	62605	62748	-
GWHAAZE00000056	CDS	62430	62501	-
GWHAAZE00000056	CDS	62275	62337	-
GWHAAZE00000056	CDS	62092	62189	-
GWHAAZE00000056	CDS	61574	61723	-
GWHAAZE00000056	CDS	61053	61394	-
GWHAAZE00000056	CDS	60458	60600	-
GWHAAZE00000056	CDS	59512	59832	-

Transcript Sequence
>GWHTAAZE032918 ATGTGGAGAGAAGCAGTGAGCGTGCTCTGTTTCTTGATATTATTTTGGAGTTCTGCATATGGTTTGCTTTCTGCCAAAGGTGTAAATTTTGAAGTTCAAGCTTTAATGAATATAAAAGCTTCGTTGGAGGATCCTCATGGAGTTCTTGAGAATTGGGATAGTGATGCTGTTGATCCCTGTAGTTGGGCTATGGTTACTTGTTCTTCTGAGAGTTTGGTCATTGGCCTTGGAACTCCTAGCCAGAATTTGTCTGGCACTCTTTCCCCAAGCATTGGCAACTTAACTAATCTCCAGATTGTCCTCTTACAGAATAACAACATAACAGGAGCAATACCAACAGAGCTTGGGAAGCTGTGGAAGCTTCATACACTTGATCTTTCTGATAATTTCTTCGACGGTGAAATTCCCTCTTCTTTAGGCAACCTGAAAAGCCTTCAATACATGAGGCTTAACAACAACAGTCTCTACGGAGAAATCCCAGTGACATTGCCCAACATGACCCAACTTGCATTTGTAGACTTGTCTTACAATAACTTGAGTGGCCCTGTACCCAAGTTTCCTACTAAGAAAACTTTCAATATTGTTGGAAACCCTCTGATATGCGCGACAGGGTCTGAGCCAGAATGCAATGGAACGACGCTTATGCCAATGTCCATGACCTTGAATAGTTCACAAACTGCTCTACCTAGTGGGAGCCCAAAAAGTCGGAAACTTGCCATTGCCATAGGTTCGAGCCTTGGGTGCCTCTGTTTGCTCATCTTTGGGTTTGGGTTGTTTTTGTGGCGGAGGCAAAGGCATAACAGGCAGACCTTCTTTGATGTAAAAGAGCGGCATCACGAGGAAGTTTCCCTCGGTAATTTGAGGAGATTCCAATTCAGGGAACTTCAGATTGCGACAGACAACTTCAGCAACAAAAACATACTGGGAAAAGGTGGATTTGGAAATGTCTACAAAGGGTACCTCCTAGATGGTACTTGTGTGGCTGTAAAGAGGCTTAAAGATGGCAGTGCTGTTGGAGGGGAAAGACAATTCCAAACAGAAGTTGAGATGATAAGCTTAGCAGTACACCGTAACCTCCTCAGGCTATACGGTTTTTGCATGACTTCCGCTGAAAAACTTCTAGTCTACCCGTATATGTCCAACGGTAGTGTTGCTTCGCGTCTCAAAGCCCCCGAGTACCTCTCGACAGGGCAGTCATCTGAGAAGACAGACGTTTTCGGGTTTGGGATTCTTCTCCTTGAATTGATCACAGGACAGAGGGCTTTAGAATTTGGCAAGGCAGCTAACCAGAAAGGAGCAATGCTTGATTGGGTGAAAAGAATTCATCAAGAGAAGAAACTTGATGTTCTTGTTGATAAGGACTTAAAGAAGAACTATGATCGGATTGAACTGGATGAGATTGTTCAAGTTGCTCTATTGTGCACTCAATACCTCCCAGGCCACAGACCAAAGATGTCCGAAGTGGTTCGAATGCTTGAAGGAGACGGGCTTGCAGAGAGATGGGAAGCTTCTCAGAAATTCGAAACAAACAAGTATAAAACACGAGAGCTCTCTTCATCAGAGAGATACTCTGACCTCACCGACGATTCTTCGTTGTTAGTACAAGCCATAGAGCTCTCTGGACCAAGGTGA

Network for GWHGAAZE032879

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	31	68	1.50E-13
PF07714.18	PK_Tyr_Ser-Thr	305	389	5.20E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.121
	SRR3591706	second leaf	4.534
	SRR3591707	mature leaf	2.616
	SRR3591708	Shoot apex	25.069
	SRR3591709	Stem	20.644
	SRR3591710	White floral bud	7.563
	SRR3591711	White flower	8.708
	SRR3591712	Green floral bud	6.069
	SRR3591713	Yellow flower	2.558
SRP173429	SRR8316895	Juvenile bud stage	7.231
	SRR8316896	Juvenile bud stage	6.779
	SRR8316897	Juvenile bud stage	3.482
	SRR8316894	Third green stage	2.651
	SRR8316900	Third green stage	6.773
	SRR8316901	Third green stage	6.125
	SRR8316898	Complete white stage	2.262
	SRR8316899	Complete white stage	6.441
	SRR8316903	Complete white stage	4.216
	SRR8316902	Silver flowering stage	2.427
	SRR8316904	Silver flowering stage	3.283
	SRR8316905	Silver flowering stage	0.776
	SRR8316906	Gold flowering stage	2.123
	SRR8316907	Gold flowering stage	2.498
	SRR8316908	Gold flowering stage	1.775
SRP132670	SRR6706286	Control	6.392
	SRR6706287	Light intensity 50%	7.278
	SRR6706288	Light intensity 20%	7.972
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.240
	CNS0095593	Slightly white alabastrum(diploid) 2	8.817
	CNS0095594	Slightly white alabastrum(diploid) 3	6.519
	CNS0095595	Whole white alabastrum(diploid) 2	4.698
	CNS0095596	Whole white alabastrum(diploid) 3	3.800
	CNS0095597	Whole white alabastrum(diploid) 4	5.242
	CNS0095598	Silvery flower (diploied) 1	13.131
	CNS0095599	Silvery flower (diploied) 2	7.567
	CNS0095600	Silvery flower (diploied) 3	6.010
	CNS0095601	Golden flower (diploid) 1	7.480
	CNS0095602	Golden flower (diploid) 2	5.055
	CNS0095603	Golden flower (diploid) 3	4.888
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.006
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.313
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.638
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.458
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.453
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.657
	CNS0095610	Silvery flower (tetraploid) 1	7.559
	CNS0095611	Silvery flower (tetraploid) 2	5.890
	CNS0095612	Silvery flower (tetraploid) 3	3.782
	CNS0095613	Golden flower (tetraploid) 1	0.599
	CNS0095614	Golden flower (tetraploid) 2	3.013
	CNS0095615	Golden flower (tetraploid) 3	0.805
CRA001975	CRR073297	Stem 1	15.972
	CRR073298	Stem 2	15.380
	CRR073299	Stem 3	25.253
	CRR073300	Leaf 1	15.208
	CRR073301	Leaf 2	12.482
	CRR073302	Leaf 3	8.825
	CRR073303	Juvenile bud 1	13.833
	CRR073304	Juvenile bud 2	7.207
	CRR073305	Juvenile bud 3	17.227
	CRR073306	Third green 1	3.471
	CRR073307	Third green 2	3.401
	CRR073308	Third green 3	3.870
	CRR073309	Second white 1	1.578
	CRR073310	Second white 2	0.935
	CRR073311	Second white 3	1.152
	CRR073312	Silver flowering 1	0.536
	CRR073313	Silver flowering 2	0.345
	CRR073314	Silver flowering 3	0.167
	CRR073315	Gold flowering 1	3.532
	CRR073316	Gold flowering 2	3.484
	CRR073317	Gold flowering 3	3.787
	CRR073318	Tawny withering 1	29.478
	CRR073319	Tawny withering 2	15.936
	CRR073320	Tawny withering 3	40.301