Gene detail

Detail information of GWHGAAZE032856

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI40054.3	8.18009E-85	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9SGI7\|LYK2_ARATH	8E-32	Protein LYK2 (Precursor)
trEMBL	tr\|F6I5K1\|F6I5K1_VITVI	3E-85	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62219.1}
TAIR10	AT3G01840.1	4E-30	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000053	gene	569178	573257	-
GWHAAZE00000053	mRNA	569178	573257	-
GWHAAZE00000053	exon	569178	569644	-
GWHAAZE00000053	exon	569810	570110	-
GWHAAZE00000053	exon	570450	570624	-
GWHAAZE00000053	exon	570764	570905	-
GWHAAZE00000053	exon	572531	573257	-
GWHAAZE00000053	CDS	572531	573257	-
GWHAAZE00000053	CDS	570764	570905	-
GWHAAZE00000053	CDS	570450	570624	-
GWHAAZE00000053	CDS	569810	570110	-
GWHAAZE00000053	CDS	569178	569644	-

Transcript Sequence
>GWHTAAZE032895 ATGGCACACAAGCGTAACACCCTTACAGCAGCCATTCCTTCTTCCTCGGCCTCACCCGAACAATCATCATCATCATCTTCGATGCTGATGCCTCATCTGAATCCAAATCCAAACAACTACAGAAGGGCTTGTCCAAATCCAAAAAACTATTCCGAATCTGAGTCCAGCGATGATGATTCCGCCTCGAATTCCGATTCCACAAGCAAGATCATTCTCACCAAACCGATGCCTAATTCCTCCGACCCCAAGAAACCGGAGATGAAGCCCGCCGGAAAGTCATTGTCCACTCTGGTGAAACCCATCAGAAAGAGACCAAGGGAGACCCAACAAAATGGAGAGGATTCGAGGGGAAAGAAGAGTAAGGCGTCGGATAAGGATGGTAGAATTGAGGAAAAAACAGAGGCAATGGCTGCATTAGAAGAGCCAATGGCTGATGAGAAAGATTTTTTTTCTACTTATCCAAGATTGTACCACCAAATGTTTAATATGGAGAACAATGTTTATCCGCCATTGTCTGATGATGGGAGGAGGTTTTTGAAGGACAATATGAGTTTGATCGGGAGTTCCAAGGCAAATGAGTTGGATACTAAATGGAGGGATTTGCAGGTGGAGGAATTGGAGTTGTACTCAAAGACGATGGAGTTATACTCAAAGAAGATGGAGCTGATTGCTGAACAGAGTAAACTGTTGGTGGATGCAGTCAAGTCATCTAAGGATTGTAAAAGAGCAGAAGCAAATGGATTCAATGCCAACAAAGAGTATCTCCCATCTGACCAGCCTTTATGGATTCCAATTGACTGCAAATGCAAAAATGGTGTCTTTGGTGCCGAGTTAACGAAAACAACTACAAAAGGCGAAAGCTTTAATGGCACTGAAGTTAAGCTTTTGCTTTCTTATCCTGTAAGTGAAAGTGACATGGTTTTGAACTTAGTTGTAAAGTTCAACACTACTCCTGAAGGAATAGTTTTTGCAAATAACATATCGGCTTCGGGTTTTAAGGCAGATAGCCTTGTGCCCTGTTCAACAATTCTGATTCCTCTGAGGGTGGCGTTGGAGGCCTTCACTCTCGAGGAGCTGAGGAAAGCAATCGAGGAATTTAGTTCAAGCAATCTCATTGAGGATTCGGTTTTCCATAGCCGACTCAATGGGAAGAACATAGCCATAAAGTGCGCGAAAACAGAAACCGTTTCAAAGGTTGAGTTTGGCCTATTCCATGATTCGGTTCACCATGACCCAAACATTATTCGGCTTTTAGGGGTATATGTGGCCGAGGAGGGGGGGCCCGGTTCATACTTGGTTTTCGAGTATGCGAAAAAAGGGTATTTAAAGGACTGGCTCCATGGTGACGAAGAATTCAATGCCAAAGTTGGGAATTTTGGCATGGCTAAATGTGCTGAAGATGATATTAACCAAGGCCAAGGCTAAGACCAGGACCAGGACCTGGATAGGGACCAACCTTGTTCAAGCCATAGTGGCCATTGGGCCAAAGGTTACTTAGCACCCGAGTATCTTCACCACGGGGTGATTGCATCAAGCATCAATATATTCTCTTATGGGGTGATTTTGCTCGAGGTTCTATTTGGGCAACTACCCATAAGTCGGAATAGCGAGAAAAGGAAATGGAGTGTTTGGCTGTCGAAGAAAATCAAGTTCGATATACAAACAGATAACGCAGAGGAGTTGAGAGAGTGGATGGACAATGCCTTGGGGGAGAATTATTCATTTGATGCAGCCATCACAATTGCTAATATTGCAAGAGCTTGCGTAGAAGATGACCCATCTTTGAGACCTAACGCAGGGGAAATCGTTTAG

Network for GWHGAAZE032856

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	453	601	1.70E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.059
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.151
	SRR8316896	Juvenile bud stage	0.261
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.037
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.045
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.038
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.058
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.075
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.025
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.039
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.066
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.019
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.588
	CRR073298	Stem 2	0.009
	CRR073299	Stem 3	0.085
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000