Gene detail

Detail information of GWHGAAZE032811

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	1.8046E-103	unnamed protein product [Coffea canephora]
COG	YP_008151634.1	4E-25	hypothetical protein SCE1572_26190
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	5E-97	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	7E-104	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G51550.1	4E-81	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000050	gene	23676	32296	+
GWHAAZE00000050	mRNA	23676	32296	+
GWHAAZE00000050	exon	23676	24696	+
GWHAAZE00000050	exon	24946	24982	+
GWHAAZE00000050	exon	25077	25430	+
GWHAAZE00000050	exon	25999	26135	+
GWHAAZE00000050	exon	26219	26331	+
GWHAAZE00000050	exon	26438	26480	+
GWHAAZE00000050	exon	27690	27760	+
GWHAAZE00000050	exon	28106	28246	+
GWHAAZE00000050	exon	31291	31735	+
GWHAAZE00000050	exon	31842	32296	+
GWHAAZE00000050	CDS	23676	24696	+
GWHAAZE00000050	CDS	24946	24982	+
GWHAAZE00000050	CDS	25077	25430	+
GWHAAZE00000050	CDS	25999	26135	+
GWHAAZE00000050	CDS	26219	26331	+
GWHAAZE00000050	CDS	26438	26480	+
GWHAAZE00000050	CDS	27690	27760	+
GWHAAZE00000050	CDS	28106	28246	+
GWHAAZE00000050	CDS	31291	31735	+
GWHAAZE00000050	CDS	31842	32296	+

Transcript Sequence
>GWHTAAZE032849 ATGTTGCTTTTTCCAGGATTTACCTCAAGTTTTGTTACTTTCCCTCTCTTAATTCCCTCTCATGACAAAGATTTTATTCATAATATCGTCCCTTCGGTTGTTTTGTTAATCATAATCACTCTACGCGTCATCATTCCTCCTATCCTAAGTTTTCTTCGACGAGGAGACAAGTTTACCTCCCCGGTAGATCAATATTGCCGTCGGTTAACATTTGCCGAGATCCGAGCAGCCACTCGGAACTTTTCCCATGGATTTGTTATCGGAAAAGGTGGGTTTGGTAAGGTTTTCAAAGGTGTCATTGATATTAATGGAGCTACTACGGTTGCCATAAAGCGATTGGATCCCTTGTCCAAACAAGGGGGTAAGGAATTTTCAACTGAGATAGAAATGCTTTCTAAAATTCGGCACAGTAATATTGTTTCTCTTATGGGTTACTGCGATGACAATGACGAAATGATCCTTGTTTACGAATACATGAAAAATGGAAGCTTGGCTGACCATCTTTACAAAGAAAAAGTAAGAAATGATAGTAATTCTAATATGTCGTGGGTAAAACGTGTTAAGATATGTATAGGGGCAGCACGGGGATTAGATTATCTTCACAGTGGCACAGGTATATTGCATAGGGTTATACACCGTGATGTGAAGAGTTCAAATATCTTACTGGATGAAAATTGGGCAGCTAAGATATCTGACTTTGGGTTGTCCAAAACAGGCCCAGCAAATCAGTCATTGACCCATGTTAGTACTCGTGTTAAAGGAACTCCAGGTTACTGTGATCCAGAGTATTTCTTGACTCGCCGTTTAACTAGAAAATCAGATGTTTATTCTTTCGGGGTGGTGTTGTTCGAAGTGTTGTGTGGAAGGCCGGCATTTGATTATAGACTACCTAAGGAGCAAATAAGTCTAGTGCTATGGGCCCAAGACTGCATCCAAGAAGAAAAAACACACTTGCTTATAGATCCCAATTTGAAGTGGGAAATTTTTGAGAATTCTTTGAAGGATTTTGTGAAAATTGCTGGAATTGAAAAACCCTCTTTGGAGGAAGATACCTTGAGGGAGGATACACCTGGAGGCTCTGCTTCTGAAACCTTGTCCTTAATAAAGGGGAACATGACATGTGAAGAGCAGATCTATGACAACATTCTGGTGAGTGAGGTTGCGTCGACGTCCTCTCTCCAGGTTGGACCAGCATTACCGGAGAAGAAGGATTCTTCTGTACTTGATGACGACGTTTATGATTTTGGCGAGACTTTTGACAAGCGAAAGGCAGAGGGCTCTTCTGCTGTACTGTCGGGTATTGCATATACGGATTCTTCAAGTTTAAACGTTCTCATGCCATTGGTTTCCAACTTGCCTATAGGGCAAAATGAAGGGATTGAAAAAACCTCCGTGGCAGAAGATGCCTCGAGGGAGGATACACTTGGAGGTCCTGCTTCTGAAACTTTGTCCAATATAACGGCAAACATGATATATGAAGAGCAGATCAATGAAAACATTCTTCACGCTCCCACAGTCGCTGATCGGACTGCTTCTTCTGCTTTAGAAGTAGAAGAGGGCCCTGGCATAGAAGGGGTTCAAGTCAATGGGGATGCAAAACTAGGAGCGGAACTTATAGCTTGTCCATATCCTATACGCGAAACTTCTCTGTGTAATTTTCAGTGGCTCCGTTATCTTCAGGATAACACAAAAATGTACATTGAGGAACCAGATATGCAACAGGAAATTGACAGATACATTTCTGAAGGCCTAGCCACATTCAATGTTCTGTTCTTGCCAGATTCCCATGGCGGCGTTGTGCCAACAACTCGTTTTGGAAAGGTCATGCTACCTTTTGGGATCTATGGACCACCAGCTATTGAATTTTCTAGGCAATCAGCTAATGAAATTTCGAAGACATTTTGTGATGTTACTTCGAAATTCAACTACCGGGCGGCCGATCAAATTTGCCGTCAGTTTTCGATTGCAGAGATCCAAGCAGCCACTCACAATTTTTCCCATGGATTTGTAATCCGAAAAGGCGGATTTGGTAAGGTTTTCAAAGGTATCCTGGACAACGGAGCTACTACGGTTGCTATAAAGCGATTGGATCCTATATCCAAACAAGGGGGTAAGGAATTTACAACTGAGATAGAAATGCTTTCTAAAATTCGACACAGTCATGTTGTTTCTCTTCTTGGTTACTGCAATGGCAATGACGAAATGATCCTTGTTTATAAATACATGGAAAATGGAAGCTTGGTTGATCATCTTTACAAAGAAAAAGTAAGAAATGGTAGTAATTCTAATATGTCGTGGGTAAAACGAGTTAAGATCTGTATAGGAGCAGCTCGAGGATTAGATTATCTTCACACTGGCACAGGACCGGCAAATCAATCATTGACCCATGTTAGTACCCGTGTTAAAGGAACTTCAGGTAATTGCGATCCGGAGTATTTCTTGACTCGTCGTTTAGCTAGAAAATTATATGTTTATTCTTTTAAAGTAGTGTTGTTCGAAGTGTTGTGTGGAAGGCCGGCATTTGATTATAAACTTCCTAAGGAACAAATAAGCCTAGTGCTATGGGCCCAAGATTGCATCCAAGATGAAAAAACTCACTTGCTTATAGATCCCAATTTGAAGTGGGAAATTTTTGAGAATTCTTTGAAGGCTTTTGTGAATATTGCTGGTCAGTGCTTGCATAGTCGTTCGAAAAAACGACCTACCATGAGTGAGGTTGCGGCCTCACTTGAGGTTGCATTGGCATTACAGGAGAAGAAGGATTCTTCTTTACTTGATGAAGATATTTTTGATTTTGGTGAAACTTATGACAACTGA

Network for GWHGAAZE032811

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0253	Protein Kinases RLK-Pelle_CrRLK1L-1 family Protein Kinases RLK-Pelle_CrRLK1L-1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	86	291	1.50E-46
PF07714.18	PK_Tyr_Ser-Thr	671	785	3.00E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.081
	SRR3591706	second leaf	0.010
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.018
	SRR3591709	Stem	0.020
	SRR3591710	White floral bud	0.028
	SRR3591711	White flower	0.088
	SRR3591712	Green floral bud	0.076
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.602
	SRR8316896	Juvenile bud stage	1.238
	SRR8316897	Juvenile bud stage	0.508
	SRR8316894	Third green stage	0.738
	SRR8316900	Third green stage	0.980
	SRR8316901	Third green stage	0.569
	SRR8316898	Complete white stage	0.241
	SRR8316899	Complete white stage	0.961
	SRR8316903	Complete white stage	0.639
	SRR8316902	Silver flowering stage	0.354
	SRR8316904	Silver flowering stage	0.865
	SRR8316905	Silver flowering stage	0.290
	SRR8316906	Gold flowering stage	0.965
	SRR8316907	Gold flowering stage	0.659
	SRR8316908	Gold flowering stage	0.392
SRP132670	SRR6706286	Control	1.020
	SRR6706287	Light intensity 50%	1.017
	SRR6706288	Light intensity 20%	0.956
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.379
	CNS0095593	Slightly white alabastrum(diploid) 2	0.290
	CNS0095594	Slightly white alabastrum(diploid) 3	0.139
	CNS0095595	Whole white alabastrum(diploid) 2	0.357
	CNS0095596	Whole white alabastrum(diploid) 3	0.097
	CNS0095597	Whole white alabastrum(diploid) 4	0.208
	CNS0095598	Silvery flower (diploied) 1	1.416
	CNS0095599	Silvery flower (diploied) 2	0.653
	CNS0095600	Silvery flower (diploied) 3	0.413
	CNS0095601	Golden flower (diploid) 1	0.643
	CNS0095602	Golden flower (diploid) 2	0.481
	CNS0095603	Golden flower (diploid) 3	0.626
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.039
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.056
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.117
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.050
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.063
	CNS0095610	Silvery flower (tetraploid) 1	0.037
	CNS0095611	Silvery flower (tetraploid) 2	0.014
	CNS0095612	Silvery flower (tetraploid) 3	0.043
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.047
	CNS0095615	Golden flower (tetraploid) 3	0.005
CRA001975	CRR073297	Stem 1	0.450
	CRR073298	Stem 2	0.335
	CRR073299	Stem 3	0.054
	CRR073300	Leaf 1	0.285
	CRR073301	Leaf 2	0.279
	CRR073302	Leaf 3	0.114
	CRR073303	Juvenile bud 1	0.212
	CRR073304	Juvenile bud 2	0.011
	CRR073305	Juvenile bud 3	0.128
	CRR073306	Third green 1	0.018
	CRR073307	Third green 2	0.042
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.007
	CRR073311	Second white 3	0.021
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.020
	CRR073316	Gold flowering 2	0.069
	CRR073317	Gold flowering 3	0.025
	CRR073318	Tawny withering 1	0.063
	CRR073319	Tawny withering 2	0.154
	CRR073320	Tawny withering 3	0.059