Gene detail

Detail information of GWHGAAZE032749

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01575.1	9.4373E-178	unnamed protein product [Coffea canephora]
COG	YP_004571825.1	9E-23	serine/threonine protein kinase
Swissprot	tr\|Q8H1D6\|RBK1_ARATH	3E-138	Receptor-like cytosolic serine/threonine-protein kinase RBK1
trEMBL	tr\|A0A068TZ45\|A0A068TZ45_COFCA	4E-178	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01575.1}
TAIR10	AT5G65530.1	3E-113	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000040	gene	409779	418609	-
GWHAAZE00000040	mRNA	409779	418609	-
GWHAAZE00000040	exon	409779	409947	-
GWHAAZE00000040	exon	410553	410702	-
GWHAAZE00000040	exon	410946	411081	-
GWHAAZE00000040	exon	411347	411426	-
GWHAAZE00000040	exon	413101	413255	-
GWHAAZE00000040	exon	417564	417824	-
GWHAAZE00000040	exon	418534	418609	-
GWHAAZE00000040	CDS	418534	418609	-
GWHAAZE00000040	CDS	417564	417824	-
GWHAAZE00000040	CDS	413101	413255	-
GWHAAZE00000040	CDS	411347	411426	-
GWHAAZE00000040	CDS	410946	411081	-
GWHAAZE00000040	CDS	410553	410702	-
GWHAAZE00000040	CDS	409789	409947	-
GWHAAZE00000040	three_prime_UTR	409779	409788	-

Transcript Sequence
>GWHTAAZE032787 ATGAAGTCTGGTGGAGAGATGAATGATTGCCCCTTTGAAATGCTGATTGAAAGTAGCAATGTGGGGGTGAATAGAGATAAGATAATTGGAAAAGGAGGGCATGCAGAAGTGTACAAAGGCCGTTTGTCTGATGGTCGAGTGGTGGCAGTGAAGAAATTATTAAAGCATTTAGAGAAGAAGAATGAGGACAGAGTTGGAGATTTCTTGTCTGAGCTTGGGATTATTGCTCATATCAACCACCCAAATGTTTCCTCATTAATTGGGTTCAGCATCGATCGTGGCTCATACCTTGTCCTCGAATTTGCTCGACATGGAAGCCTCACTAATGTACTACATGGTTCAGATGAGAACTTGGAATGGAAGAAAAGGTTCAAGGTGGCCCTTGGTGTGGCTGAAGGATTGAATTATCTTCATAGCAATTCCCAAAGGCGCATAATTCACAGAGACATCACTGCCTCAAACATACTACTCACTGAAGACTATGAACCTCAGATTTCTGATTTCGGGTTAGCAAAATGGCTACCGGAGAAATGGGCTCACCATGTTGTGTCTCCCATTGAGGGCACTTTCGGATATATGGCTCCAGAATATTTCATGGATGGAATAATCCATGAGAAAACTGATGTATTTGCATTTGGGGTTTTATTACTGGAGATTATAACTGGTCGCCATGCGGTTGATTCATCTCAACAAAGCCTTGTGATGTGGGCGAAACCTCTACTGGAGTCAAATAATGCAAAAGAACTAGCAGATCCGCAATTAGGAGATAATTTTGATATCCTTGAAATGAGACGTGCCATGTTTGCAGCTGCTGCGTGCCTTCATCACTTGCCAAGCACTCGCCCATCCATGGACAAGGTGGTTCAGATGATGAAAGCTGAGAAGATACCAGTAGAAATGAGGCAAACTTCTATGGGAGGGAAAGCAGTGCTGGTGGAGGCTTGTGACTTGGAGGGCTACACCTGCGCAACTTACATCGCAGACCTTAGTCGCCATATGGAGCTCGTTATGGAGTAACTTTATACTA

Network for GWHGAAZE032749

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	25	290	1.30E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.036
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.788
	SRR3591710	White floral bud	79.222
	SRR3591711	White flower	4.387
	SRR3591712	Green floral bud	67.064
	SRR3591713	Yellow flower	2.748
SRP173429	SRR8316895	Juvenile bud stage	1.551
	SRR8316896	Juvenile bud stage	9.238
	SRR8316897	Juvenile bud stage	1.686
	SRR8316894	Third green stage	3.963
	SRR8316900	Third green stage	33.155
	SRR8316901	Third green stage	32.371
	SRR8316898	Complete white stage	0.092
	SRR8316899	Complete white stage	0.199
	SRR8316903	Complete white stage	0.257
	SRR8316902	Silver flowering stage	0.535
	SRR8316904	Silver flowering stage	2.146
	SRR8316905	Silver flowering stage	0.649
	SRR8316906	Gold flowering stage	0.295
	SRR8316907	Gold flowering stage	0.131
	SRR8316908	Gold flowering stage	0.098
SRP132670	SRR6706286	Control	17.680
	SRR6706287	Light intensity 50%	19.633
	SRR6706288	Light intensity 20%	18.018
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.218
	CNS0095593	Slightly white alabastrum(diploid) 2	28.702
	CNS0095594	Slightly white alabastrum(diploid) 3	41.706
	CNS0095595	Whole white alabastrum(diploid) 2	106.591
	CNS0095596	Whole white alabastrum(diploid) 3	111.845
	CNS0095597	Whole white alabastrum(diploid) 4	150.811
	CNS0095598	Silvery flower (diploied) 1	3.262
	CNS0095599	Silvery flower (diploied) 2	14.553
	CNS0095600	Silvery flower (diploied) 3	2.789
	CNS0095601	Golden flower (diploid) 1	3.553
	CNS0095602	Golden flower (diploid) 2	2.368
	CNS0095603	Golden flower (diploid) 3	2.223
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.929
	CNS0095605	Slightly white alabastrum(tetraploid) 2	69.600
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.111
	CNS0095607	Whole white alabastrum(tetraploid) 1	154.204
	CNS0095608	Whole white alabastrum(tetraploid) 2	180.528
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.649
	CNS0095610	Silvery flower (tetraploid) 1	1.094
	CNS0095611	Silvery flower (tetraploid) 2	6.263
	CNS0095612	Silvery flower (tetraploid) 3	18.505
	CNS0095613	Golden flower (tetraploid) 1	1.866
	CNS0095614	Golden flower (tetraploid) 2	0.542
	CNS0095615	Golden flower (tetraploid) 3	9.628
CRA001975	CRR073297	Stem 1	5.461
	CRR073298	Stem 2	8.041
	CRR073299	Stem 3	3.317
	CRR073300	Leaf 1	39.054
	CRR073301	Leaf 2	24.221
	CRR073302	Leaf 3	12.795
	CRR073303	Juvenile bud 1	38.041
	CRR073304	Juvenile bud 2	21.179
	CRR073305	Juvenile bud 3	1.848
	CRR073306	Third green 1	11.653
	CRR073307	Third green 2	14.164
	CRR073308	Third green 3	12.637
	CRR073309	Second white 1	1.065
	CRR073310	Second white 2	3.087
	CRR073311	Second white 3	2.936
	CRR073312	Silver flowering 1	12.853
	CRR073313	Silver flowering 2	8.739
	CRR073314	Silver flowering 3	4.697
	CRR073315	Gold flowering 1	14.267
	CRR073316	Gold flowering 2	9.211
	CRR073317	Gold flowering 3	5.335
	CRR073318	Tawny withering 1	14.235
	CRR073319	Tawny withering 2	14.991
	CRR073320	Tawny withering 3	11.498