Gene detail

Detail information of GWHGAAZE032747

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01573.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q52QU2\|AIL6_ARATH	3E-150	AP2-like ethylene-responsive transcription factor AIL6
trEMBL	tr\|A0A068U1U0\|A0A068U1U0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01573.1}
TAIR10	AT5G10510.2	2E-115	AINTEGUMENTA-like 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000040	gene	389373	394435	+
GWHAAZE00000040	mRNA	389373	394435	+
GWHAAZE00000040	exon	389373	389796	+
GWHAAZE00000040	exon	390052	390134	+
GWHAAZE00000040	exon	392029	392117	+
GWHAAZE00000040	exon	392243	392316	+
GWHAAZE00000040	exon	392774	392824	+
GWHAAZE00000040	exon	392929	393005	+
GWHAAZE00000040	exon	393779	394435	+
GWHAAZE00000040	five_prime_UTR	389373	389392	+
GWHAAZE00000040	CDS	389393	389796	+
GWHAAZE00000040	CDS	390052	390134	+
GWHAAZE00000040	CDS	392029	392117	+
GWHAAZE00000040	CDS	392243	392316	+
GWHAAZE00000040	CDS	392774	392824	+
GWHAAZE00000040	CDS	392929	393005	+
GWHAAZE00000040	CDS	393779	394221	+
GWHAAZE00000040	three_prime_UTR	394222	394435	+

Transcript Sequence
>GWHTAAZE032785 AAGAAGTGGTAGGGCAAAGCATGGATGATTCAGTTCCAAAACTGGAAGATTTTTTTGCCACTCCGATGGTTCATTATTCCGACAGCCAAACGGACACTCAGGATGACTCTTCCCTCACTCACATCTATGATCAGAACCATTGTGGGGCCTACTTTGCTGGTCCGGCCGCACCCTTTCAGGCCTTCTCGAACAACTCGGGGTCTGAAGTTGATGATTCAGTATCGGCCGTGACAACACACATGGCTTCGACTGAGTCGAGGACCGAGTTGGCCTACTCGCAGTGTAATACGGGTGGTTTGTCACTTGGGGTTAATAATAATGCTCAGATCTGTGAGAAAGCTATTGTTGCGGTTAATTCGGAGAGTTGTAAGAAGATTGCTGATACATTTGGGCAGAGAACTTCAATTTACAGAGGAGTTACTAGGCACAGGTGGACGGGAAGATACGAAGCACATCTGTGGGACAACAGCTGTAGAAGAGAGGGCCAGGCCAGAAAGGGGCGTCAAGGTGGGTATGATAAAGAAGACAAGGCAGCAAGAGCTTATGACTTGGCAGCTTTGAAATACTGGGGTCTCAATGCCACCACTAACTTTCCTGTTTCAAACTATTCCAAAGAAGTGGAGGAGATGAATAATGTGACTAAGCAAGAATTTATTGCCTCATTAAGAAGGAAAAGTAGTGGGTTCTCGAGAGGTGCATCTATCTACAGGGGTGTAACAAGGCATCATCAACAAGGCCGATGGCAGGCAAGGATTGGTCGTGTCGCTGGAAATAAAGATCTATACCTTGGAACATTTGCCACCGAGGAGGAAGCAGCGGAGGCATATGACATAGCAGCCATCAAGTTCAGGGGTGCCAATGCTGTCACAAATTTCGAAATGAACCGATACGACGTTGAAGCCATTGCCAACAGTTCTCTTCCAGTTGGTGGGGCTGCAAAGCGCTTGAAACTCTCACTCGAGGCTGAGCAAAAACCGCTGTACCAGCACAACCAGCAGCTGCCCTGCAGCAGTGGCACCACTGCCAGTAGCATCAGTTTCGCCTCCATTCATCCAATTTCCGCCATCCCCTATGGCATGCCATATGATTCCACCACCACTCCACTATACCAGCACCAACTCTTCCATCGTGGCAATGTGGGCCCTTCCGATACCTCAGGATCCGTCTCTTCGGTGGTAAGTCCGGTTCCCTTGTTGCCACCACCACCTGAGTTTTTCATGTGGCCCCACCAATCTTATTAGAGCAGTGCTATTCGTACCGTGTATTCGTACTAGTGTGCTTCAAGTGTTGTACATTGAGGTACAATAGTTGTTAAGTATTATGCGGAAGAATAGTGGTTTCCATCTTTATTAAAATGATATATCTAGTTTATGACTTTGTCGACAACACCATGGAGCCAAGTTTGACCTGATAAGTAGGTTTTGTTTGTGGTGTTTTTCTTTAGATTAAGCTGAC

Network for GWHGAAZE032747

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	129	184	1.10E-08
PF00847.21	AP2	228	278	1.60E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.718
	SRR3591706	second leaf	0.411
	SRR3591707	mature leaf	0.192
	SRR3591708	Shoot apex	6.256
	SRR3591709	Stem	0.590
	SRR3591710	White floral bud	1.207
	SRR3591711	White flower	0.480
	SRR3591712	Green floral bud	0.416
	SRR3591713	Yellow flower	0.061
SRP173429	SRR8316895	Juvenile bud stage	0.988
	SRR8316896	Juvenile bud stage	0.315
	SRR8316897	Juvenile bud stage	0.071
	SRR8316894	Third green stage	0.078
	SRR8316900	Third green stage	0.101
	SRR8316901	Third green stage	0.369
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.588
	SRR8316903	Complete white stage	0.161
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.443
SRP132670	SRR6706286	Control	0.231
	SRR6706287	Light intensity 50%	0.129
	SRR6706288	Light intensity 20%	0.094
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.209
	CNS0095593	Slightly white alabastrum(diploid) 2	0.277
	CNS0095594	Slightly white alabastrum(diploid) 3	0.483
	CNS0095595	Whole white alabastrum(diploid) 2	0.793
	CNS0095596	Whole white alabastrum(diploid) 3	0.221
	CNS0095597	Whole white alabastrum(diploid) 4	0.213
	CNS0095598	Silvery flower (diploied) 1	0.553
	CNS0095599	Silvery flower (diploied) 2	0.358
	CNS0095600	Silvery flower (diploied) 3	0.276
	CNS0095601	Golden flower (diploid) 1	0.548
	CNS0095602	Golden flower (diploid) 2	0.532
	CNS0095603	Golden flower (diploid) 3	0.500
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.975
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.553
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.184
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.775
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.182
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.140
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.463
	CNS0095612	Silvery flower (tetraploid) 3	0.125
	CNS0095613	Golden flower (tetraploid) 1	0.022
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.048
CRA001975	CRR073297	Stem 1	1.844
	CRR073298	Stem 2	0.394
	CRR073299	Stem 3	2.176
	CRR073300	Leaf 1	0.188
	CRR073301	Leaf 2	0.001
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.346
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.038
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.002
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.033
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.036
	CRR073316	Gold flowering 2	0.557
	CRR073317	Gold flowering 3	0.290
	CRR073318	Tawny withering 1	1.505
	CRR073319	Tawny withering 2	1.166
	CRR073320	Tawny withering 3	1.672