Gene detail

Detail information of GWHGAAZE032744

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007047770.1	0	U-box domain-containing protein kinase family protein, putative [Theobroma cacao]
COG	YP_001957591.1	0.000000003	hypothetical protein Aasi_0451
Swissprot	tr\|Q9FGD7\|PUB50_ARATH	0	Putative U-box domain-containing protein 50
trEMBL	tr\|A0A061DI55\|A0A061DI55_THECC	0	U-box domain-containing protein kinase family protein, putative {ECO:0000313\|EMBL:EOX91927.1}
TAIR10	AT5G65500.1	0	U-box domain-containing protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000040	gene	352988	357860	-
GWHAAZE00000040	mRNA	352988	357860	-
GWHAAZE00000040	exon	352988	353244	-
GWHAAZE00000040	exon	353608	354316	-
GWHAAZE00000040	exon	355357	355899	-
GWHAAZE00000040	exon	356256	356396	-
GWHAAZE00000040	exon	356743	357172	-
GWHAAZE00000040	exon	357253	357380	-
GWHAAZE00000040	exon	357470	357582	-
GWHAAZE00000040	exon	357677	357860	-
GWHAAZE00000040	CDS	357677	357860	-
GWHAAZE00000040	CDS	357470	357582	-
GWHAAZE00000040	CDS	357253	357380	-
GWHAAZE00000040	CDS	356743	357172	-
GWHAAZE00000040	CDS	356256	356396	-
GWHAAZE00000040	CDS	355357	355899	-
GWHAAZE00000040	CDS	353608	354316	-
GWHAAZE00000040	CDS	352988	353244	-

Transcript Sequence
>GWHTAAZE032782 AGTGAAAATTCAAGCCAAAGAAATGGAGATGCTCAAGCAGAGAAGGTGTATGTAGCCATTGGGAGTGATCTTCAAGAAGGGTTGAGGACCTTGGAATGGGCACTTAGAAAGTGGTCTTCTCATTATATCTCTATAGTAATTCTCTATTCGGCTAATAACACCACCAATTATGTTTATACTCCATTTGGAAAACTCCCTGCAAGTTCTGTGAGTGATGAGAAAGTAAAGGTTCTTAGAAAATGTGAACAGGACAAGGTTGACAAGAATCTAGCAAACTACATAGCATTTTGTGGAAAGGTCAAAGCAGAGATTCTTCATATCCAGAAATTCGTCGAACCCATTCATAAGATCATTTTAGAATTAATTTCGGATCTTCGGGTAACAAAATTAGTTATGGGAATTACATTCATGAAGTCCTCCTTGTGGAAATCAAAGAGTGTAATCAGTGGGTTATGTTATGTTCAAGGGAAGAAACCCGATTTCTGTGAGTTGTTCATAATAGGCAGAGGAAAACTAGTTTTCCTCAGAGAGGAAAATAATGAAGAATATATAGAGGATGATCATGGAGTTATGGTTGCCAAATCTAATAAGAAGGCGAGCTTCAAAGGTTGGTTAGGGAAAATGTTTCCCGAGAATTCTAGCGAAAAAAGTCCCCGTTTCTCGCCCTCTTCGTCAACGAGCAACAGTTTGAGGTGGGAGAAAAATGTGGAAGAAATAGAAAATTATTTCCATCAATTGTTAACTTCGAATATGGAGGAAGCAGATGGTGAGATGGAAAATGAAATATTTCAAAGTGGTCCCACAGAGACAGACAAGACACAAAATATGGTAAGATTGTCATTTGTTTTCTCTAGGCGTGGTGCAGAACAAATTGCAGCATTGAAAATCAAAATACACAAAGCCCGTGAGACAGTAAAGGCAAAGAAGAAAGAGGCTAAGGACAATGCACAAAGACGTGCAAAAGCCGAATGGACCATTTCTCTATGCACTCGGAGGTCCGAAGAACTTGAATCGCGTATAACTGAAGAAATTGCAAACAGACTTAACCTAACAAAAGATTTAGACGCCTCAAAAGATGAAATTCAAGAGATTCAAAGCGAAATCGAAGAGAGAAAGAGTAAGCTTAATTCAATGATAGAACTACAAAGCGAGCTCTCAATCAAACTCAAATCATCTTCTTTGGCAAAACTGAGCGTTGAAGCTCAACTAGAGAAGGCGGTGGGAACAAGAACCAACATGGTGCAAGAGATCGAGAAATTTAGAAGGCAAAGAGATGTTGTGAACCGTCGGATTGAGTTTTGTAAAGAGAAGGATGCAATCGGATTGGCTACAAGGTTGAGTGAGCTGAGTTTTAGATATACAGAGTTCAGTGCCGAGGAGATTAGGGCAGCTACCAATGATTTTTCAGAGCGTTTGAGGTTGAAATCAACCGGTGATTATACGAATGTGTATAGGGGGAGGATCAACCATACAACTGTTGCAATCAAACTTTGTGGTTTAGAGATCAATGGACTATCTCAAGAAGCTTTCCAAGTTAAGGTGAAGCTTCTCAGCCACATCCGGCATCCCCACATGGTCGCAGTGCTCGGCTCCTGCTCTGAGCTCAAATGCATCGTCTTTGAGTATATGCACAATGGCAGCTTAAGAGACACGCTCTTCTCACCTAACAGAAGCTCTAAAAGAACAAACCAGTGCCTCAATTGGCATGCTCGTATACATATTGCAGCCGAGGTTGGCTTGGGCCTGGGCTTCCTACACCTGGCCCAGCCGAGGCCCATCACCCACAATGGCCTCAACCCCTCCAAAATCCTCCTCGACCAAAATAACGTTGCCAAAATCCACACTTTTAGGCTTCAATTGTGCTATGACGAATCCAATTTGAGGGCTGATATGCAGGCTTTGGGGAACATTGTGCTACAGCTTCTAACAGGGAGAAATTGGGCCGGGCTCGTGGAAGATGCAAGAGTAATGGACCGTGGGGCCCTTATTGGTGTGTTGGATCACACGGCTGGGGAATGGCCACTGGAATTGGCGATGGAACTTGCTATGATTGCAATGAAATGTTTGTCTACTAAAGGAGGGCCAGATGAGTCGAGTGTGGTTACAGTGATGAGAGAAATTTTAGAGGTCAGAAAAAAGGCCGATGATCTAGCAGCAAGGACGGGCATGACAGCGACAGTTGAAGCAGCTGTAGAAGATGGAGGACTCGAGTGTTGTACCAAGTGCTTTTTTATGCCCGATATTTCAGTAATTATTATATTGTTTAACTATATGTTAATACTTATTTTTAACCTTTTTCGGAAACAGGATGTAATGAAGGATCCACACTTGGCAGAGGATGGGTTTTCATATGAGCTAGAAGCCATAAAAGAATGGTTAGGGACAGGGCATGATACATCGCCAATGACAAACTTAAAGCTTAAGCACAAGCATCTTACTGCTAATCACACTCTACGTTCACTAATAGAGGATTGGCATAATAAGAGGTCCATTCCTCTTAGATAA

Network for GWHGAAZE032744

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	477	626	2.90E-17
PF04564.16	U-box	770	830	2.60E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	biological_process	protein ubiquitination
GO:0006468	biological_process	protein phosphorylation
GO:0004842	molecular_function	ubiquitin-protein transferase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.235
	SRR3591706	second leaf	1.018
	SRR3591707	mature leaf	6.635
	SRR3591708	Shoot apex	1.942
	SRR3591709	Stem	4.418
	SRR3591710	White floral bud	1.915
	SRR3591711	White flower	2.930
	SRR3591712	Green floral bud	1.221
	SRR3591713	Yellow flower	3.472
SRP173429	SRR8316895	Juvenile bud stage	2.202
	SRR8316896	Juvenile bud stage	3.830
	SRR8316897	Juvenile bud stage	1.472
	SRR8316894	Third green stage	0.945
	SRR8316900	Third green stage	2.429
	SRR8316901	Third green stage	3.183
	SRR8316898	Complete white stage	1.306
	SRR8316899	Complete white stage	2.661
	SRR8316903	Complete white stage	1.745
	SRR8316902	Silver flowering stage	1.529
	SRR8316904	Silver flowering stage	1.858
	SRR8316905	Silver flowering stage	0.619
	SRR8316906	Gold flowering stage	3.489
	SRR8316907	Gold flowering stage	3.457
	SRR8316908	Gold flowering stage	2.854
SRP132670	SRR6706286	Control	1.974
	SRR6706287	Light intensity 50%	1.470
	SRR6706288	Light intensity 20%	1.575
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.749
	CNS0095593	Slightly white alabastrum(diploid) 2	1.962
	CNS0095594	Slightly white alabastrum(diploid) 3	2.838
	CNS0095595	Whole white alabastrum(diploid) 2	2.210
	CNS0095596	Whole white alabastrum(diploid) 3	1.686
	CNS0095597	Whole white alabastrum(diploid) 4	1.666
	CNS0095598	Silvery flower (diploied) 1	3.723
	CNS0095599	Silvery flower (diploied) 2	3.051
	CNS0095600	Silvery flower (diploied) 3	3.048
	CNS0095601	Golden flower (diploid) 1	4.743
	CNS0095602	Golden flower (diploid) 2	3.569
	CNS0095603	Golden flower (diploid) 3	4.522
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.735
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.647
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.693
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.994
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.598
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.977
	CNS0095610	Silvery flower (tetraploid) 1	3.267
	CNS0095611	Silvery flower (tetraploid) 2	3.374
	CNS0095612	Silvery flower (tetraploid) 3	2.767
	CNS0095613	Golden flower (tetraploid) 1	3.245
	CNS0095614	Golden flower (tetraploid) 2	3.421
	CNS0095615	Golden flower (tetraploid) 3	3.550
CRA001975	CRR073297	Stem 1	2.736
	CRR073298	Stem 2	1.900
	CRR073299	Stem 3	0.596
	CRR073300	Leaf 1	2.854
	CRR073301	Leaf 2	2.042
	CRR073302	Leaf 3	0.621
	CRR073303	Juvenile bud 1	0.438
	CRR073304	Juvenile bud 2	0.204
	CRR073305	Juvenile bud 3	0.454
	CRR073306	Third green 1	0.342
	CRR073307	Third green 2	0.278
	CRR073308	Third green 3	0.196
	CRR073309	Second white 1	0.271
	CRR073310	Second white 2	0.567
	CRR073311	Second white 3	0.668
	CRR073312	Silver flowering 1	0.189
	CRR073313	Silver flowering 2	0.534
	CRR073314	Silver flowering 3	0.317
	CRR073315	Gold flowering 1	2.897
	CRR073316	Gold flowering 2	5.763
	CRR073317	Gold flowering 3	1.409
	CRR073318	Tawny withering 1	6.067
	CRR073319	Tawny withering 2	4.856
	CRR073320	Tawny withering 3	1.271