Detail information of GWHGAAZE032723


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010241815.10PREDICTED: protein ALWAYS EARLY 3-like isoform X1 [Nelumbo nucifera]
Swissprottr|Q6A332|ALY3_ARATH0Protein ALWAYS EARLY 3
trEMBLtr|M5WJB8|M5WJB8_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ09328.1}
TAIR10AT3G05380.51E-171DIRP ;Myb-like DNA-binding domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000039gene220941243641-
GWHAAZE00000039mRNA220941243641-
GWHAAZE00000039exon243550243641-
GWHAAZE00000039exon240920241038-
GWHAAZE00000039exon238848238946-
GWHAAZE00000039exon237957238019-
GWHAAZE00000039exon237052237129-
GWHAAZE00000039exon236148236316-
GWHAAZE00000039exon234861235105-
GWHAAZE00000039exon234137234500-
GWHAAZE00000039exon233252233329-
GWHAAZE00000039exon231060231316-
GWHAAZE00000039exon230627230683-
GWHAAZE00000039exon230295230384-
GWHAAZE00000039exon227747228058-
GWHAAZE00000039exon227279227457-
GWHAAZE00000039exon226907227189-
GWHAAZE00000039exon225030225236-
GWHAAZE00000039exon223984224136-
GWHAAZE00000039exon223344223454-
GWHAAZE00000039exon223096223176-
GWHAAZE00000039exon222402222443-
GWHAAZE00000039exon221868222221-
GWHAAZE00000039exon220941221111-
GWHAAZE00000039five_prime_UTR243550243641-
GWHAAZE00000039five_prime_UTR241025241038-
GWHAAZE00000039CDS240920241024-
GWHAAZE00000039CDS238848238946-
GWHAAZE00000039CDS237957238019-
GWHAAZE00000039CDS237052237129-
GWHAAZE00000039CDS236148236316-
GWHAAZE00000039CDS234861235105-
GWHAAZE00000039CDS234137234500-
GWHAAZE00000039CDS233252233329-
GWHAAZE00000039CDS231060231316-
GWHAAZE00000039CDS230627230683-
GWHAAZE00000039CDS230295230384-
GWHAAZE00000039CDS227747228058-
GWHAAZE00000039CDS227279227457-
GWHAAZE00000039CDS226907227189-
GWHAAZE00000039CDS225030225236-
GWHAAZE00000039CDS223984224136-
GWHAAZE00000039CDS223344223454-
GWHAAZE00000039CDS223096223176-
GWHAAZE00000039CDS222402222443-
GWHAAZE00000039CDS222120222221-
GWHAAZE00000039three_prime_UTR221868222119-
GWHAAZE00000039three_prime_UTR220941221111-
Transcript Sequence

Network for GWHGAAZE032723

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding45821.40E-09
PF06584.14DIRP6607602.20E-32
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.156
SRR3591706second leaf6.175
SRR3591707mature leaf5.484
SRR3591708Shoot apex9.197
SRR3591709Stem9.163
SRR3591710White floral bud9.293
SRR3591711White flower11.678
SRR3591712Green floral bud7.182
SRR3591713Yellow flower10.101
SRP173429 SRR8316895Juvenile bud stage 6.581
SRR8316896Juvenile bud stage 8.006
SRR8316897Juvenile bud stage 4.386
SRR8316894Third green stage 3.456
SRR8316900Third green stage 7.202
SRR8316901Third green stage 7.431
SRR8316898Complete white stage 2.458
SRR8316899Complete white stage 7.085
SRR8316903Complete white stage 7.193
SRR8316902Silver flowering stage4.028
SRR8316904Silver flowering stage6.999
SRR8316905Silver flowering stage3.171
SRR8316906Gold flowering stage 9.646
SRR8316907Gold flowering stage 8.169
SRR8316908Gold flowering stage 9.041
SRP132670SRR6706286Control5.409
SRR6706287Light intensity 50%4.986
SRR6706288Light intensity 20%5.797
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.023
CNS0095593Slightly white alabastrum(diploid) 24.303
CNS0095594Slightly white alabastrum(diploid) 35.275
CNS0095595Whole white alabastrum(diploid) 24.853
CNS0095596Whole white alabastrum(diploid) 34.536
CNS0095597Whole white alabastrum(diploid) 45.525
CNS0095598Silvery flower (diploied) 14.135
CNS0095599Silvery flower (diploied) 25.962
CNS0095600Silvery flower (diploied) 36.959
CNS0095601Golden flower (diploid) 14.611
CNS0095602Golden flower (diploid) 27.501
CNS0095603Golden flower (diploid) 37.547
CNS0095604Slightly white alabastrum(tetraploid) 15.318
CNS0095605Slightly white alabastrum(tetraploid) 24.934
CNS0095606Slightly white alabastrum(tetraploid) 36.566
CNS0095607Whole white alabastrum(tetraploid) 14.698
CNS0095608Whole white alabastrum(tetraploid) 26.482
CNS0095609Whole white alabastrum(tetraploid) 37.464
CNS0095610Silvery flower (tetraploid) 17.382
CNS0095611Silvery flower (tetraploid) 26.744
CNS0095612Silvery flower (tetraploid) 38.491
CNS0095613Golden flower (tetraploid) 14.224
CNS0095614Golden flower (tetraploid) 26.132
CNS0095615Golden flower (tetraploid) 37.198
CRA001975CRR073297Stem 17.578
CRR073298Stem 26.725
CRR073299Stem 35.727
CRR073300Leaf 17.170
CRR073301Leaf 25.352
CRR073302Leaf 33.270
CRR073303Juvenile bud 13.974
CRR073304Juvenile bud 22.088
CRR073305Juvenile bud 34.716
CRR073306Third green 12.902
CRR073307Third green 22.870
CRR073308Third green 33.446
CRR073309Second white 13.577
CRR073310Second white 24.676
CRR073311Second white 35.182
CRR073312Silver flowering 14.194
CRR073313Silver flowering 22.913
CRR073314Silver flowering 34.198
CRR073315Gold flowering 11.839
CRR073316Gold flowering 23.293
CRR073317Gold flowering 30.993
CRR073318Tawny withering 14.782
CRR073319Tawny withering 24.593
CRR073320Tawny withering 35.566