Gene detail

Detail information of GWHGAAZE032682

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002509979.1	6.5992E-106	calcineurin B, putative [Ricinus communis]
Swissprot	tr\|O81223\|CNBL4_ARATH	1E-90	Calcineurin B-like protein 4
trEMBL	tr\|B9RCU5\|B9RCU5_RICCO	2E-106	Calcineurin B, putative {ECO:0000313\|EMBL:EEF51366.1}
TAIR10	AT5G24270.2	3E-72	Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000036	gene	1680211	1681779	-
GWHAAZE00000036	mRNA	1680211	1681779	-
GWHAAZE00000036	exon	1680211	1680295	-
GWHAAZE00000036	exon	1680380	1680492	-
GWHAAZE00000036	exon	1680567	1680647	-
GWHAAZE00000036	exon	1680803	1680855	-
GWHAAZE00000036	exon	1681008	1681116	-
GWHAAZE00000036	exon	1681259	1681318	-
GWHAAZE00000036	exon	1681538	1681620	-
GWHAAZE00000036	exon	1681725	1681779	-
GWHAAZE00000036	CDS	1681725	1681779	-
GWHAAZE00000036	CDS	1681538	1681620	-
GWHAAZE00000036	CDS	1681259	1681318	-
GWHAAZE00000036	CDS	1681008	1681116	-
GWHAAZE00000036	CDS	1680803	1680855	-
GWHAAZE00000036	CDS	1680567	1680647	-
GWHAAZE00000036	CDS	1680380	1680492	-
GWHAAZE00000036	CDS	1680211	1680295	-

Transcript Sequence
>GWHTAAZE032720 ATGAAGCATCGGCCTGTATACGAAGACCCAGCTTTGCTTGCGGATCAAACTTATTTTAATGTGAAAGATGTCAGAGCATTGTATGAGCTTTTCAAGAAATTAAGCAGTTCTTTAGTAGATGATGGTTTTATCAGCAAAGAAGAGTTTCAGCTTGGTTTGTTTAGGAATAGCAAGAAGAGGTCTCTGTTTGCAGATAGGATCTTCTCTTTGTTTGACTACAACAATGATGGAGTGATAGAGTTTTGTGAGTTTGTCAAATCTTTGAGCGTCTTCCACCCCGATGCACCTCAAGCTGAGAAAGCTGCCTTTGCATTTCAACTATATGACATATGGCAAACAGGTTTCATCGAACGGGAAGAGGTTAAGGAGCTGATTTTGGCTCTTCTATGCGAGTCAGACTTGATCCTCTCCGACGACATTGTTGAGACCATTATTGATAAGACCTTTGAGGAAGCAGATTTAAAAGGAGACGGAAAGATTGATACAGATGAGTGGAAGGATTTTGTGACTCGTCATCCATCCTTGTTAAAGAACTTGACAATTCCTTATTTGAAGGATCTTACAACTGCATTTCCTAGTTTCATGCTGAAATCAGAACTTGAAGATGAGATTATAACAACTATCATTGAAAAGAATTAA

Network for GWHGAAZE032682

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13202.7	EF-hand_5	41	50	0.14
PF13202.7	EF-hand_5	65	86	0.00084
PF13499.7	EF-hand_7	99	167	5.20E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06268	PPP3R, CNB	MAPK signaling pathway	map04010
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Natural killer cell mediated cytotoxicity	map04650
		T cell receptor signaling pathway	map04660
		Th1 and Th2 cell differentiation	map04658
		Th17 cell differentiation	map04659
		B cell receptor signaling pathway	map04662
		Glucagon signaling pathway	map04922
		Oxytocin signaling pathway	map04921
		Renin secretion	map04924
		Glutamatergic synapse	map04724
		Long-term potentiation	map04720
		Axon guidance	map04360
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.432
	SRR3591706	second leaf	0.122
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.948
	SRR3591709	Stem	5.364
	SRR3591710	White floral bud	1.586
	SRR3591711	White flower	0.411
	SRR3591712	Green floral bud	0.118
	SRR3591713	Yellow flower	0.111
SRP173429	SRR8316895	Juvenile bud stage	0.384
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.245
	SRR8316900	Third green stage	0.366
	SRR8316901	Third green stage	0.259
	SRR8316898	Complete white stage	0.604
	SRR8316899	Complete white stage	2.996
	SRR8316903	Complete white stage	1.747
	SRR8316902	Silver flowering stage	0.322
	SRR8316904	Silver flowering stage	0.186
	SRR8316905	Silver flowering stage	0.093
	SRR8316906	Gold flowering stage	0.070
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	3.810
SRP132670	SRR6706286	Control	0.514
	SRR6706287	Light intensity 50%	0.475
	SRR6706288	Light intensity 20%	0.349
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.435
	CNS0095593	Slightly white alabastrum(diploid) 2	1.172
	CNS0095594	Slightly white alabastrum(diploid) 3	0.438
	CNS0095595	Whole white alabastrum(diploid) 2	0.704
	CNS0095596	Whole white alabastrum(diploid) 3	0.132
	CNS0095597	Whole white alabastrum(diploid) 4	0.578
	CNS0095598	Silvery flower (diploied) 1	0.514
	CNS0095599	Silvery flower (diploied) 2	0.514
	CNS0095600	Silvery flower (diploied) 3	0.132
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.826
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.367
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.932
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.924
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.925
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.348
	CNS0095610	Silvery flower (tetraploid) 1	0.516
	CNS0095611	Silvery flower (tetraploid) 2	0.243
	CNS0095612	Silvery flower (tetraploid) 3	0.005
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.115
	CRR073298	Stem 2	0.549
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.192
	CRR073301	Leaf 2	0.534
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.193
	CRR073304	Juvenile bud 2	0.114
	CRR073305	Juvenile bud 3	0.452
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000