Gene detail

Detail information of GWHGAAZE032626

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15967.1	1.57508E-97	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	2E-25	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	6E-98	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	2E-23	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000029	gene	106933	108270	-
GWHAAZE00000029	mRNA	106933	108270	-
GWHAAZE00000029	exon	106933	108270	-
GWHAAZE00000029	CDS	106933	108270	-

Transcript Sequence
>GWHTAAZE032664 ATGCCTGACTATCTTCCTCAAGAATTGCAGCAAGAAATCCTCTCAAGGCTACCTATTCAATCTCTGCTTCAATTCAGGTGCGTATCAAAGTCATGGAACTCTCTAATCACTAGCCCTAATTTCATCACTACTCACTTAAACCGAACACTTGCTTCCAATTCCAATCAAACAAACACTCGCACACTCCCCAGGCATTACTCTCTCACTCAAGAGAAAGAGATTTTTTCTTTTCGATTTGACACCAAGGACACGGACGCATTTGATGTGTATCAACACCTCAAATGCCCACTCAGGAGAAACTATGGGTACTATTTTAGCATCATTGGCTCTTGCAATGGCTTGCTCTGTCTCACCGATGACATTTTTGAATATACAAACAGTGTTTTCCTTTGGAACCCATCAATTAGGAGGTATTTGAAACTTCCTGTGCCTCGTGTTACTACGGATACGGAGTTGCATAAGTATTTGATGTGTGTTTATGGTTTTGGTGTTGATCCCAATACTAATGATTACAAGGTTGTGAGGATTTCGTACACGAAAAAGCATAAAGAGTGTTATTTCGCTCCTGAAGTTGAGCTTTATAAACTTAACACGCACTCTTGGATTGACCTCCCTTGGGAAGAAGTTAGGGGTGTTTTGCCCCCTTTTGGTATAGGTGAGCATTTGTGGTCACGAGCTTTTATGAATGGTAAAGTTCATTGGATTGGGTATAAACAAAATCGCTCATCAAGTTGCAGCTACCGCGCGAGCATTTGTTGTTTTGTTCTCTTGTTTGATATGGGAAATGATGTGTCTAGCGAGTTCCAATTGCCGGAGAGTTTGGTTTATGTGGTACCATTAAACTTAACAGTTGCTCTAATGGGCGAATCACTTTTGGTGTTGCAGTGTGATGAATATTTGCATAGTAGGGTTTGTACTGTATGGATTATGAAAGAATATGGTGTTGTTGAGTCTTGGAGTAAACTGTGCACTATTGATCTTGGGGGACTATTAATGAGGACAATTGGGTTGAGGAAGAATGGTGATTTTCTTCTTGCAGTGGATGAAGATTTGTTTTCTTATAATCCCAATAACCATCATATCAAGAACCTTGGACTGCAAAGCTCAAGTCATGCATTTTACATGGCTGATTATGTGGACAGTCTAGTTTTACTTGAGGAAGGACATAAAGTCCCTATGGACACTGAAAATTCGGCAGATGAACTGGAGGCTGATGAGGATTTTTATTTTGATGGTTTGGCACAACAACGCAGAGAGAACGAAATCCAGGGCTGTATCCTCCGAGTTTTAACATTGTTGTTAAGTTACGTTGATGAATTCAGCCTCTTACCACTGTAG

Network for GWHGAAZE032626

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	5	43	1.70E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.906
	SRR3591706	second leaf	1.049
	SRR3591707	mature leaf	0.845
	SRR3591708	Shoot apex	1.640
	SRR3591709	Stem	0.800
	SRR3591710	White floral bud	0.863
	SRR3591711	White flower	0.857
	SRR3591712	Green floral bud	1.928
	SRR3591713	Yellow flower	0.377
SRP173429	SRR8316895	Juvenile bud stage	0.859
	SRR8316896	Juvenile bud stage	1.924
	SRR8316897	Juvenile bud stage	0.385
	SRR8316894	Third green stage	0.643
	SRR8316900	Third green stage	1.539
	SRR8316901	Third green stage	1.018
	SRR8316898	Complete white stage	0.411
	SRR8316899	Complete white stage	1.591
	SRR8316903	Complete white stage	0.828
	SRR8316902	Silver flowering stage	0.119
	SRR8316904	Silver flowering stage	0.432
	SRR8316905	Silver flowering stage	0.037
	SRR8316906	Gold flowering stage	0.369
	SRR8316907	Gold flowering stage	0.250
	SRR8316908	Gold flowering stage	0.191
SRP132670	SRR6706286	Control	0.487
	SRR6706287	Light intensity 50%	0.606
	SRR6706288	Light intensity 20%	0.623
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.799
	CNS0095593	Slightly white alabastrum(diploid) 2	0.506
	CNS0095594	Slightly white alabastrum(diploid) 3	0.731
	CNS0095595	Whole white alabastrum(diploid) 2	1.204
	CNS0095596	Whole white alabastrum(diploid) 3	1.411
	CNS0095597	Whole white alabastrum(diploid) 4	0.966
	CNS0095598	Silvery flower (diploied) 1	1.408
	CNS0095599	Silvery flower (diploied) 2	0.708
	CNS0095600	Silvery flower (diploied) 3	1.431
	CNS0095601	Golden flower (diploid) 1	1.479
	CNS0095602	Golden flower (diploid) 2	1.503
	CNS0095603	Golden flower (diploid) 3	1.177
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.755
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.898
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.414
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.457
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.352
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.899
	CNS0095610	Silvery flower (tetraploid) 1	0.409
	CNS0095611	Silvery flower (tetraploid) 2	0.805
	CNS0095612	Silvery flower (tetraploid) 3	0.487
	CNS0095613	Golden flower (tetraploid) 1	0.264
	CNS0095614	Golden flower (tetraploid) 2	0.235
	CNS0095615	Golden flower (tetraploid) 3	0.146
CRA001975	CRR073297	Stem 1	0.990
	CRR073298	Stem 2	1.106
	CRR073299	Stem 3	1.228
	CRR073300	Leaf 1	0.871
	CRR073301	Leaf 2	0.292
	CRR073302	Leaf 3	0.388
	CRR073303	Juvenile bud 1	0.661
	CRR073304	Juvenile bud 2	0.536
	CRR073305	Juvenile bud 3	1.093
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.030
	CRR073309	Second white 1	0.519
	CRR073310	Second white 2	0.023
	CRR073311	Second white 3	0.083
	CRR073312	Silver flowering 1	0.060
	CRR073313	Silver flowering 2	0.061
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.987
	CRR073316	Gold flowering 2	1.105
	CRR073317	Gold flowering 3	0.426
	CRR073318	Tawny withering 1	0.816
	CRR073319	Tawny withering 2	0.054
	CRR073320	Tawny withering 3	0.565