Detail information of GWHGAAZE032544


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14125.12.4314E-97unnamed protein product [Coffea canephora]
Swissprottr|Q9M2K8|AGL18_ARATH3E-66Agamous-like MADS-box protein AGL18
trEMBLtr|A0A068V010|A0A068V010_COFCA9E-98Coffea canephora DH200=94 genomic scaffold, scaffold_80 {ECO:0000313|EMBL:CDP14125.1}
TAIR10AT3G57390.11E-54AGAMOUS-like 18

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000021gene44310334436189-
GWHAAZE00000021mRNA44310334436189-
GWHAAZE00000021exon44359234436189-
GWHAAZE00000021exon44345344434609-
GWHAAZE00000021exon44340554434122-
GWHAAZE00000021exon44338124433911-
GWHAAZE00000021exon44328554432896-
GWHAAZE00000021exon44323534432394-
GWHAAZE00000021exon44320924432216-
GWHAAZE00000021exon44310334431415-
GWHAAZE00000021five_prime_UTR44361054436189-
GWHAAZE00000021CDS44359234436104-
GWHAAZE00000021CDS44345344434609-
GWHAAZE00000021CDS44340554434122-
GWHAAZE00000021CDS44338124433911-
GWHAAZE00000021CDS44328554432896-
GWHAAZE00000021CDS44323534432394-
GWHAAZE00000021CDS44320924432216-
GWHAAZE00000021CDS44313164431415-
GWHAAZE00000021three_prime_UTR44310334431315-
Transcript Sequence

Network for GWHGAAZE032544

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00319.19SRF-TF10572.00E-25
PF01486.18K-box871717.60E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMADS-MIKC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0045944biological_processpositive regulation of transcription by RNA polymerase II
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0005634cellular_componentnucleus
GO:0000977molecular_functionRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003677molecular_functionDNA binding
GO:0046983molecular_functionprotein dimerization activity
GO:0003700molecular_functionDNA-binding transcription factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.160
SRR3591708Shoot apex0.000
SRR3591709Stem1.793
SRR3591710White floral bud35.358
SRR3591711White flower68.089
SRR3591712Green floral bud58.932
SRR3591713Yellow flower56.501
SRP173429 SRR8316895Juvenile bud stage 22.667
SRR8316896Juvenile bud stage 57.990
SRR8316897Juvenile bud stage 22.176
SRR8316894Third green stage 20.155
SRR8316900Third green stage 71.465
SRR8316901Third green stage 48.500
SRR8316898Complete white stage 35.923
SRR8316899Complete white stage 25.352
SRR8316903Complete white stage 45.715
SRR8316902Silver flowering stage46.051
SRR8316904Silver flowering stage43.104
SRR8316905Silver flowering stage13.603
SRR8316906Gold flowering stage 26.773
SRR8316907Gold flowering stage 49.484
SRR8316908Gold flowering stage 10.887
SRP132670SRR6706286Control98.583
SRR6706287Light intensity 50%92.720
SRR6706288Light intensity 20%100.647
CNP0000432CNS0095592Slightly white alabastrum(diploid) 144.751
CNS0095593Slightly white alabastrum(diploid) 232.071
CNS0095594Slightly white alabastrum(diploid) 387.859
CNS0095595Whole white alabastrum(diploid) 236.209
CNS0095596Whole white alabastrum(diploid) 343.403
CNS0095597Whole white alabastrum(diploid) 464.244
CNS0095598Silvery flower (diploied) 126.107
CNS0095599Silvery flower (diploied) 242.226
CNS0095600Silvery flower (diploied) 3107.246
CNS0095601Golden flower (diploid) 139.387
CNS0095602Golden flower (diploid) 265.090
CNS0095603Golden flower (diploid) 360.629
CNS0095604Slightly white alabastrum(tetraploid) 139.189
CNS0095605Slightly white alabastrum(tetraploid) 255.829
CNS0095606Slightly white alabastrum(tetraploid) 38.133
CNS0095607Whole white alabastrum(tetraploid) 147.786
CNS0095608Whole white alabastrum(tetraploid) 251.649
CNS0095609Whole white alabastrum(tetraploid) 3124.229
CNS0095610Silvery flower (tetraploid) 1133.597
CNS0095611Silvery flower (tetraploid) 269.292
CNS0095612Silvery flower (tetraploid) 356.720
CNS0095613Golden flower (tetraploid) 1113.166
CNS0095614Golden flower (tetraploid) 261.080
CNS0095615Golden flower (tetraploid) 335.847
CRA001975CRR073297Stem 116.868
CRR073298Stem 220.028
CRR073299Stem 318.833
CRR073300Leaf 19.232
CRR073301Leaf 29.843
CRR073302Leaf 313.677
CRR073303Juvenile bud 16.022
CRR073304Juvenile bud 29.983
CRR073305Juvenile bud 34.423
CRR073306Third green 17.777
CRR073307Third green 210.208
CRR073308Third green 36.959
CRR073309Second white 15.915
CRR073310Second white 211.666
CRR073311Second white 38.144
CRR073312Silver flowering 15.111
CRR073313Silver flowering 26.207
CRR073314Silver flowering 39.346
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.178
CRR073319Tawny withering 20.123
CRR073320Tawny withering 30.058