Gene detail

Detail information of GWHGAAZE032530

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278289.1	0	PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Vitis vinifera]
Swissprot	tr\|O65628\|CTU2_ARATH	5E-168	Cytoplasmic tRNA 2-thiolation protein 2 {ECO:0000255\|HAMAP-Rule:MF_03054}
trEMBL	tr\|D7THW2\|D7THW2_VITVI	0	Cytoplasmic tRNA 2-thiolation protein 2 {ECO:0000256\|HAMAP-Rule:MF_03054}
TAIR10	AT4G35910.1	5E-137	Adenine nucleotide alpha hydrolases-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	4143475	4151771	+
GWHAAZE00000021	mRNA	4143475	4151771	+
GWHAAZE00000021	exon	4143475	4143794	+
GWHAAZE00000021	exon	4146773	4147121	+
GWHAAZE00000021	exon	4147664	4147750	+
GWHAAZE00000021	exon	4149939	4150060	+
GWHAAZE00000021	exon	4150265	4150343	+
GWHAAZE00000021	exon	4151412	4151771	+
GWHAAZE00000021	CDS	4143475	4143794	+
GWHAAZE00000021	CDS	4146773	4147121	+
GWHAAZE00000021	CDS	4147664	4147750	+
GWHAAZE00000021	CDS	4149939	4150060	+
GWHAAZE00000021	CDS	4150265	4150343	+
GWHAAZE00000021	CDS	4151412	4151771	+

Transcript Sequence
>GWHTAAZE032568 ATGGCTTGTGGTACAGAAACCTGCCAGTCTGGTTGTTACAAAGACAACAACGATGAAGAAGATGTACAATCAGTGACTGAGAAGAGAAAAGAAGCAACTAATGGCGTTATTCATAGTGGGGACAATTTGTGTCTGAAATGCAAGACAAACAAGTCCATCGCAGCCGCCACCGGTAGTGGCGGCGGAGATTGTGGTAAGTTCTGTGCCGATTGCTTCAGGAGCAACCTGTTTGGGAAATTTAAGTTAGCAGTTACCTCAAATGCCATGATTTCTCCTTCTGATAGCGTCCTCGTCGCTTTCTCCGGCGGTTCTTCTTCCAGGGTCGCTCTTGAGTTTGTTCATGAGATGCAACACAAAGCACAGAAGAATTTTGATGCAAGTAGAGATAGATCATTACCAGTATTTGGTGTTGGCATTGCTTTTATTGATGAAAGTGCTGTTTATCCAGTCCCTTTTGAAGAATTTGACAAAGCTGTTGATGAGATGAGGCTGATTGTGTCCAATTTAACTCCACCGAGAAAAGAATTCCATGTTGCTCCAATTGAAACTATCTGTTCTTCTGATTCCAGTGACGGAAAGAACAGGTTGAAAGAGTTACTGAATGCTGTTAGTGATGTCACTGGTAGAGAAGATCTTTTGTTGCATCTGCGGATGTTGTCCTTGCAAAAGGTTGCTCTTGACAATGGATACACTAAAATTTTGTTAGGATCATGCACGTCGAAGATAGCATGCCACGTCATTACAGCAACCATTAAGGGTCAGGGTTTCTCTTTAGCAGCAGATATACAATATGTGGATGCTAGGTGCGAGATACCAGTGGTGCTTCCCCTACGCGATTGTCTTGCACAAGAGCTTAACCTGCTATGTAGCCTTGACAGTCTAAAGACCATTGAGGTGTTTAATGTTCCTCATGCTGGCATCAACGGCTTAGTTTCCTCATTTGTGAAACTCCTACAGGAAGAAAATCCTTCTCGAGAATGCACAATTGTACGTACAGCTGGAAAGCTTACCCCGTTTCAATTCAATAGGATGCCAGAAAGTGATGACAGTAATGTTCGTTTGGCATCACAACGGCGTCAAAAGAAATTCAATTTGAAGCCTTCTAATGAATCTCTGCCCCCAGAGTCATTCTGCGCTATTTGCAGTAGTCCTCTCAACAAATCCGACTTTCCAAGTCTCCCCAGTTTCAAGAACTCCCAAACAAGTACTGAAAATTTTGCAGCCGTATGTTGTGCGAGTTGCCGGTTTCAAATACTTCCCAACGAACCGTTATCTCTAGAGCACTTTTCATTCACTCTTACCACAGCCAATAATTGA

Network for GWHGAAZE032530

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14169	CTU2, NCS2	Sulfur relay system	map04122

Gene Ontology

GO term	Ontology	Name
GO:0002098	biological_process	tRNA wobble uridine modification
GO:0034227	biological_process	tRNA thio-modification
GO:0000049	molecular_function	tRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.158
	SRR3591706	second leaf	7.433
	SRR3591707	mature leaf	7.242
	SRR3591708	Shoot apex	12.518
	SRR3591709	Stem	10.168
	SRR3591710	White floral bud	16.069
	SRR3591711	White flower	19.160
	SRR3591712	Green floral bud	20.497
	SRR3591713	Yellow flower	10.291
SRP173429	SRR8316895	Juvenile bud stage	7.360
	SRR8316896	Juvenile bud stage	10.492
	SRR8316897	Juvenile bud stage	4.408
	SRR8316894	Third green stage	5.410
	SRR8316900	Third green stage	14.417
	SRR8316901	Third green stage	12.512
	SRR8316898	Complete white stage	3.738
	SRR8316899	Complete white stage	18.755
	SRR8316903	Complete white stage	8.290
	SRR8316902	Silver flowering stage	5.051
	SRR8316904	Silver flowering stage	7.906
	SRR8316905	Silver flowering stage	2.657
	SRR8316906	Gold flowering stage	7.999
	SRR8316907	Gold flowering stage	7.958
	SRR8316908	Gold flowering stage	8.702
SRP132670	SRR6706286	Control	13.938
	SRR6706287	Light intensity 50%	13.477
	SRR6706288	Light intensity 20%	14.889
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.561
	CNS0095593	Slightly white alabastrum(diploid) 2	6.638
	CNS0095594	Slightly white alabastrum(diploid) 3	7.143
	CNS0095595	Whole white alabastrum(diploid) 2	6.460
	CNS0095596	Whole white alabastrum(diploid) 3	7.156
	CNS0095597	Whole white alabastrum(diploid) 4	4.172
	CNS0095598	Silvery flower (diploied) 1	8.080
	CNS0095599	Silvery flower (diploied) 2	6.729
	CNS0095600	Silvery flower (diploied) 3	12.811
	CNS0095601	Golden flower (diploid) 1	4.252
	CNS0095602	Golden flower (diploid) 2	11.141
	CNS0095603	Golden flower (diploid) 3	10.884
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.345
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.072
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.138
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.237
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.373
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.855
	CNS0095610	Silvery flower (tetraploid) 1	13.821
	CNS0095611	Silvery flower (tetraploid) 2	13.060
	CNS0095612	Silvery flower (tetraploid) 3	10.703
	CNS0095613	Golden flower (tetraploid) 1	4.030
	CNS0095614	Golden flower (tetraploid) 2	8.429
	CNS0095615	Golden flower (tetraploid) 3	10.547
CRA001975	CRR073297	Stem 1	19.153
	CRR073298	Stem 2	19.653
	CRR073299	Stem 3	18.746
	CRR073300	Leaf 1	21.899
	CRR073301	Leaf 2	18.494
	CRR073302	Leaf 3	19.078
	CRR073303	Juvenile bud 1	18.426
	CRR073304	Juvenile bud 2	19.124
	CRR073305	Juvenile bud 3	27.449
	CRR073306	Third green 1	3.383
	CRR073307	Third green 2	7.016
	CRR073308	Third green 3	6.997
	CRR073309	Second white 1	6.107
	CRR073310	Second white 2	4.748
	CRR073311	Second white 3	7.936
	CRR073312	Silver flowering 1	7.417
	CRR073313	Silver flowering 2	6.540
	CRR073314	Silver flowering 3	5.011
	CRR073315	Gold flowering 1	10.315
	CRR073316	Gold flowering 2	10.285
	CRR073317	Gold flowering 3	13.258
	CRR073318	Tawny withering 1	14.030
	CRR073319	Tawny withering 2	9.492
	CRR073320	Tawny withering 3	14.673