Detail information of GWHGAAZE032529


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007028731.103'-5'-exoribonuclease family protein [Theobroma cacao]
COGYP_003901276.17E-383' exoribonuclease
Swissprottr|Q9M209|CER7_ARATH2E-21Protein ECERIFERUM 7
trEMBLtr|A0A061EX61|A0A061EX61_THECC03'-5'-exoribonuclease family protein {ECO:0000313|EMBL:EOY09233.1}
TAIR10AT1G60080.15E-1093'-5'-exoribonuclease family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000021gene41267324132155-
GWHAAZE00000021mRNA41267324132155-
GWHAAZE00000021exon41267324126815-
GWHAAZE00000021exon41276594127951-
GWHAAZE00000021exon41292664129341-
GWHAAZE00000021exon41297644129830-
GWHAAZE00000021exon41311784131283-
GWHAAZE00000021exon41313794131448-
GWHAAZE00000021exon41318464131895-
GWHAAZE00000021exon41319964132155-
GWHAAZE00000021CDS41319964132155-
GWHAAZE00000021CDS41318464131895-
GWHAAZE00000021CDS41313794131448-
GWHAAZE00000021CDS41311784131283-
GWHAAZE00000021CDS41297644129830-
GWHAAZE00000021CDS41292664129341-
GWHAAZE00000021CDS41276594127951-
GWHAAZE00000021CDS41267324126815-
Transcript Sequence

Network for GWHGAAZE032529

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01138.22RNase_PH471807.00E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12586RRP43, EXOSC8, OIP2 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.816
SRR3591706second leaf9.901
SRR3591707mature leaf8.861
SRR3591708Shoot apex24.177
SRR3591709Stem13.680
SRR3591710White floral bud7.537
SRR3591711White flower10.226
SRR3591712Green floral bud15.483
SRR3591713Yellow flower7.800
SRP173429 SRR8316895Juvenile bud stage 16.541
SRR8316896Juvenile bud stage 25.153
SRR8316897Juvenile bud stage 11.219
SRR8316894Third green stage 8.649
SRR8316900Third green stage 18.335
SRR8316901Third green stage 19.395
SRR8316898Complete white stage 3.116
SRR8316899Complete white stage 17.510
SRR8316903Complete white stage 4.914
SRR8316902Silver flowering stage3.637
SRR8316904Silver flowering stage4.109
SRR8316905Silver flowering stage1.509
SRR8316906Gold flowering stage 4.245
SRR8316907Gold flowering stage 5.132
SRR8316908Gold flowering stage 7.698
SRP132670SRR6706286Control17.459
SRR6706287Light intensity 50%18.087
SRR6706288Light intensity 20%18.694
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.723
CNS0095593Slightly white alabastrum(diploid) 214.979
CNS0095594Slightly white alabastrum(diploid) 314.865
CNS0095595Whole white alabastrum(diploid) 211.168
CNS0095596Whole white alabastrum(diploid) 313.169
CNS0095597Whole white alabastrum(diploid) 48.253
CNS0095598Silvery flower (diploied) 19.975
CNS0095599Silvery flower (diploied) 210.376
CNS0095600Silvery flower (diploied) 37.406
CNS0095601Golden flower (diploid) 15.694
CNS0095602Golden flower (diploid) 27.592
CNS0095603Golden flower (diploid) 37.058
CNS0095604Slightly white alabastrum(tetraploid) 114.669
CNS0095605Slightly white alabastrum(tetraploid) 215.449
CNS0095606Slightly white alabastrum(tetraploid) 319.305
CNS0095607Whole white alabastrum(tetraploid) 110.404
CNS0095608Whole white alabastrum(tetraploid) 26.142
CNS0095609Whole white alabastrum(tetraploid) 316.723
CNS0095610Silvery flower (tetraploid) 17.997
CNS0095611Silvery flower (tetraploid) 29.834
CNS0095612Silvery flower (tetraploid) 36.184
CNS0095613Golden flower (tetraploid) 13.306
CNS0095614Golden flower (tetraploid) 25.688
CNS0095615Golden flower (tetraploid) 31.460
CRA001975CRR073297Stem 123.623
CRR073298Stem 220.441
CRR073299Stem 316.881
CRR073300Leaf 123.021
CRR073301Leaf 222.719
CRR073302Leaf 322.320
CRR073303Juvenile bud 119.214
CRR073304Juvenile bud 211.145
CRR073305Juvenile bud 315.892
CRR073306Third green 10.996
CRR073307Third green 21.850
CRR073308Third green 31.487
CRR073309Second white 12.879
CRR073310Second white 22.176
CRR073311Second white 31.750
CRR073312Silver flowering 12.126
CRR073313Silver flowering 21.462
CRR073314Silver flowering 32.210
CRR073315Gold flowering 17.033
CRR073316Gold flowering 29.200
CRR073317Gold flowering 38.336
CRR073318Tawny withering 122.744
CRR073319Tawny withering 217.630
CRR073320Tawny withering 327.845