Gene detail

Detail information of GWHGAAZE032510

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009767418.1	0	PREDICTED: calcium-dependent protein kinase 32-like [Nicotiana sylvestris]
COG	YP_004963055.1	4E-28	serine/threonine protein kinase
Swissprot	tr\|Q42438\|CDPK8_ARATH	0	Calcium-dependent protein kinase 8
trEMBL	tr\|E3VJP8\|E3VJP8_TOBAC	0	Calcium-dependent protein kinase 8 {ECO:0000313\|EMBL:ADO79931.1}
TAIR10	AT5G19450.2	0	calcium-dependent protein kinase 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	3708846	3713145	+
GWHAAZE00000021	mRNA	3708846	3713145	+
GWHAAZE00000021	exon	3708846	3709352	+
GWHAAZE00000021	exon	3709805	3709928	+
GWHAAZE00000021	exon	3710034	3710177	+
GWHAAZE00000021	exon	3710595	3710747	+
GWHAAZE00000021	exon	3710856	3710971	+
GWHAAZE00000021	exon	3711101	3711268	+
GWHAAZE00000021	exon	3711761	3711976	+
GWHAAZE00000021	exon	3712990	3713145	+
GWHAAZE00000021	CDS	3708846	3709352	+
GWHAAZE00000021	CDS	3709805	3709928	+
GWHAAZE00000021	CDS	3710034	3710177	+
GWHAAZE00000021	CDS	3710595	3710747	+
GWHAAZE00000021	CDS	3710856	3710971	+
GWHAAZE00000021	CDS	3711101	3711268	+
GWHAAZE00000021	CDS	3711761	3711976	+
GWHAAZE00000021	CDS	3712990	3713145	+

Transcript Sequence
>GWHTAAZE032548 ATGGGGAATTGTTGTGCAGCACCATCTGATTCTTCCGAAAAGAAGAGAAAGGGAAAACACAAGCCAAACCCATTTTCTAGTGAGTATGGTGCTAATCATACTACTAATGGTGGGTACAAGTCTTATGTACTAGATGATCCAACCGGCCATGAAATTGATCTCGTATACGAGCTCGGCCGGGAGCTAGGTAGAGGCGAATTCGGGGTTACATATTTGTGTACTGATAAAACTTCGGGGGAAGTGTATGCTTGTAAATCGATATCGAAGAAAAAATTGAGGACTCGAGTGGATATCGAAGATGTGAAGAGAGAGGTTGAGATAATGAAGCATTTGCCCAAGCATCCCAATATTGTCACCTTGAAGGCTACTTATGAGGATGATAGTGCGGTCCATTTGGTGATGGAGTTGTGTGAGGGCGGTGAATTGTTCGATCGGATTGTTGCGAGAGGGCATTACACTGAACGAGCTGCTGCGGCTGTGACTCGTACGATTGTCGAAGTTATTCTGATGTGCCACAAGCATGGGGTTATGCATAGGGACCTCAAACCTGAGAACTTTTTGTTTGCAAACAAGAAGGAAACGGCACCTTTGAAGGCAATTGATTTTGGGTTGTCAGTGTTCTTTAAACCTGGCGAGAAGTTTAATGAGATTGTTGGAAGTCCTTACTACATGGCTCCTGAGGTGTTAAAACGAAACTATGGTCCAGAGGTTGATGTTTGGAGTGCCGGTGTTATCCTTTACATCCTGCTTTGTGGTGTCCCACCTTTTTGGGCAGAAACTGAGCAAGGAGTGGCACAAGCAATTATTCGGTCGGTTGTAGATTTTAAAAGGGACCCGTGGCCCAAGGTTTCCGACAATGCAAAGGACCTTGTCAAGAAGATGCTCAACCCTGACCCAAAACTGCGCCTTACTGCCCAGGCAGTCCTAGATCATCCCTGGATTCAAAACGCGAAAAAGGCACCAAATGTTTCTTTGGGTGAAACTGTGAAAGCAAGACTCAAGCAATTTTCTGTGATGAACAAGCTGAAGAAACGAGCTTTAAGGGTAATTGCTGAGCATCTATCAGCAGAGGAAGTCGCAGGAATAAAAGAGGGATTTCAGTTGATGGATATCAACAATAAAGGGAAGATAAATATCGACGAATTAAGAGCTGGGTTGAGCAAGCTTGGCCATCAAATTCCTGATGCAGATCTTCAGATTCTTATGGACGCCGGTGATGTTGATAGAGATGGACACTTGAACTATGGAGAGTACGTGGCAATTTCCGTTCATTTGAGAAAGATGGGAAATGATGATCACCTGCGTGAAGCATTTGCGTTCTTTGATAACAACAAGAGTGGGTACATAGAGATCGAAGAGCTGAGGGAAGCTTTAGCTGATGATGTCGATACCAACAATGAAGAAGTCATCAATGCCATTATTCATGACGACGGACGTATAAGTTACGAGGAGTTTGAGGCAATGATGAAGGCCGGAGTAGACTGGAGAAAAGCGTCAAGACAATATTCACGAGAACGATACAACTCTCTCAGCTTGAAGCTAATGAAGGACGGGTCGATAAAGTTAAACGACGAGGGAAGATAA

Network for GWHGAAZE032510

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	56	314	1.60E-76
PF13833.7	EF-hand_8	374	422	1.40E-05
PF13499.7	EF-hand_7	432	490	2.60E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	319.735
	SRR3591706	second leaf	79.397
	SRR3591707	mature leaf	65.369
	SRR3591708	Shoot apex	95.172
	SRR3591709	Stem	281.180
	SRR3591710	White floral bud	99.592
	SRR3591711	White flower	120.427
	SRR3591712	Green floral bud	79.272
	SRR3591713	Yellow flower	111.362
SRP173429	SRR8316895	Juvenile bud stage	143.069
	SRR8316896	Juvenile bud stage	150.047
	SRR8316897	Juvenile bud stage	116.786
	SRR8316894	Third green stage	36.753
	SRR8316900	Third green stage	87.618
	SRR8316901	Third green stage	135.697
	SRR8316898	Complete white stage	25.154
	SRR8316899	Complete white stage	206.633
	SRR8316903	Complete white stage	39.045
	SRR8316902	Silver flowering stage	39.272
	SRR8316904	Silver flowering stage	48.968
	SRR8316905	Silver flowering stage	25.877
	SRR8316906	Gold flowering stage	130.992
	SRR8316907	Gold flowering stage	111.094
	SRR8316908	Gold flowering stage	136.656
SRP132670	SRR6706286	Control	64.126
	SRR6706287	Light intensity 50%	81.471
	SRR6706288	Light intensity 20%	76.285
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	73.380
	CNS0095593	Slightly white alabastrum(diploid) 2	91.300
	CNS0095594	Slightly white alabastrum(diploid) 3	86.999
	CNS0095595	Whole white alabastrum(diploid) 2	82.319
	CNS0095596	Whole white alabastrum(diploid) 3	25.154
	CNS0095597	Whole white alabastrum(diploid) 4	69.733
	CNS0095598	Silvery flower (diploied) 1	197.409
	CNS0095599	Silvery flower (diploied) 2	192.081
	CNS0095600	Silvery flower (diploied) 3	125.901
	CNS0095601	Golden flower (diploid) 1	212.052
	CNS0095602	Golden flower (diploid) 2	197.946
	CNS0095603	Golden flower (diploid) 3	189.677
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.936
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.739
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.470
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.196
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.983
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.478
	CNS0095610	Silvery flower (tetraploid) 1	47.235
	CNS0095611	Silvery flower (tetraploid) 2	25.522
	CNS0095612	Silvery flower (tetraploid) 3	40.251
	CNS0095613	Golden flower (tetraploid) 1	44.914
	CNS0095614	Golden flower (tetraploid) 2	50.407
	CNS0095615	Golden flower (tetraploid) 3	46.888
CRA001975	CRR073297	Stem 1	88.875
	CRR073298	Stem 2	80.597
	CRR073299	Stem 3	71.981
	CRR073300	Leaf 1	117.288
	CRR073301	Leaf 2	143.437
	CRR073302	Leaf 3	87.182
	CRR073303	Juvenile bud 1	102.057
	CRR073304	Juvenile bud 2	117.337
	CRR073305	Juvenile bud 3	181.320
	CRR073306	Third green 1	63.124
	CRR073307	Third green 2	61.907
	CRR073308	Third green 3	67.910
	CRR073309	Second white 1	57.727
	CRR073310	Second white 2	65.820
	CRR073311	Second white 3	77.606
	CRR073312	Silver flowering 1	99.462
	CRR073313	Silver flowering 2	67.516
	CRR073314	Silver flowering 3	67.063
	CRR073315	Gold flowering 1	87.382
	CRR073316	Gold flowering 2	150.914
	CRR073317	Gold flowering 3	97.154
	CRR073318	Tawny withering 1	108.651
	CRR073319	Tawny withering 2	178.421
	CRR073320	Tawny withering 3	159.114