Gene detail

Detail information of GWHGAAZE032491

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009590363.1	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Nicotiana tomentosiformis]
COG	YP_004571825.1	9E-14	serine/threonine protein kinase
Swissprot	tr\|Q9C9N5\|Y1668_ARATH	1E-94	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (Precursor)
trEMBL	tr\|A0A061EWF2\|A0A061EWF2_THECC	0	Leucine-rich repeat protein kinase family protein {ECO:0000313\|EMBL:EOY09420.1}
TAIR10	AT3G57830.1	2E-150	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	3322714	3328438	-
GWHAAZE00000021	mRNA	3322714	3328438	-
GWHAAZE00000021	exon	3328255	3328438	-
GWHAAZE00000021	exon	3327168	3328082	-
GWHAAZE00000021	exon	3322714	3323354	-
GWHAAZE00000021	CDS	3328255	3328438	-
GWHAAZE00000021	CDS	3327168	3328082	-
GWHAAZE00000021	CDS	3322714	3323354	-

Transcript Sequence
>GWHTAAZE032529 ATGAACTCTATTGCATTAGTCTTCATTTGGTCATTTCTACACTTGATCTCCATTTCCAATTCTCTGAATTCTGATGGTCTCTCCCTTTTAGCCCTCAAAGCCGCCATTACCACCGACCCAACTCGGGTCCTATCCGGGTGGTCCGAGTCTGATCCGGACCCCTGCCGTTGGGCCGGAATCGCCTACCTGTCTTATAATTCTTTATATGGACCCATTCCAAAACAGATCACTACCCTCCAAGAACTAACTCATTTGGATCTTTCTTCAAATTCCCTCAATGGTTCCCTTCCTGAGGGGCTGAGTAATCTGACCCACCTCGCTGGAACCCTAAATCTTTCTTATAATCAGTTTTCCGGTGAGGTGCCATTTTCTTATGGGATGTTTCCGGTGATGGTTAGTTTGGATCTCCGGCATAATAATCTAACCGGAAAGGTACCTCAGGTAGGTTCTTTGCTTAATCAGGGGCCCACTGCCTTCTCTGGAAACCCTAATCTTTGTGGCTTTCCATTACAGACTCCATGCCCGGAACCGGAAGCTCAAAACCCTAGGCCCGAGGATCCTCAAAACCCTAAATCCTCAAATGGGTTTGTAAAGAGAGAAAGGGTGAAAAATGGGTCGGTGGCAGTTCCGGTGATTTCCGGGGTTTCGGCGGTGATCGGAGTGGTGTTTGTTTCGGTGTGGGTGTTTCGGAAGAAATGGGCGGTGAATGAGGGTAAAATGGGAAATGAAAAGTTGGAGAAGGAGGTGAGTGAGGACGGGCAAAAGGGTAAATTTGTAGTGGTTGATGAAGGGTTTGAGATGGAATTGGAGGATTTGTTGAGGGCGTCTGCTTATGTGGTGGGGAAGAGTAGGAGTGGGATATTGTACAAGGTGGTGGTGGGGAGGGGATCTGGTGCTGCGGGTGCAGTTGTTGCGGTGAGGCGGTTGAGTGAGGGTGATGCCACGTGGAGGTTCAAGGAGTTTGAGTCTGAGGTGGAGGCCATCGGCAGGGTCCACCACCCGAATATCGTACGGCTCAGAGCTTATTACTATGCTCATGATGAGAAACTGCTGGTTTCTGATTTCATCAGCAATGGGAGCTTGTACACTGCGCTTCATGACGGAGGCGGACCCGCCAATTCCTTGCCACAATTATCATGGGCATCAAGGTTGAAGATAGCGCAAGCCACTGCAAGGGCCCTAACGCACCTTCACGAATGCAGCCCCCGAAAGTACGCTCACGGCAACATAAAATCCTCGAAAATCCTACTCGATGACGATTTACAACCTTACATCTCCGGCTTCGGACTTGCCCGTCTCGTCTCAAATACCTCGAAACCCGCAAACACTCTGTCCAAAAAGCATAATTCGAGCCAAATCATAGTGAGCCCAAAAACTTCATCTTCCTCATCATCGGTTGTTTACATGGCCCCTGAGGCTCGGGTTTTCGGCAGCAGGTTCACACAGAAATGCGACGTTTATTCTTTTGGGATCGTGCTTTTGGAGATTCTGACGGGTCGGGTTCCAGATGCGGGGCCTGATGATGACGGGAACGGGCTAGAGAGCATAGTGAGGAACGTTTTTAGAGAGGAACGGCCCTTGTCAGAGATTATAGACCAAGGGCTCTTGCACGAGGTACATGCAAAGGGGCAGGTTGTTGCAGCGTTCCATATCGCGCTGAATTGCACCGAGGTGGACCCAGAGGTTAGGCCGAGGATGAGAATGGTGTCGGATAGCCTCAACCGTATCAAGTTGCAATGA

Network for GWHGAAZE032491

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	23	60	1.20E-09
PF07714.18	PK_Tyr_Ser-Thr	281	571	4.40E-27

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.878
	SRR3591706	second leaf	19.146
	SRR3591707	mature leaf	15.872
	SRR3591708	Shoot apex	29.041
	SRR3591709	Stem	6.954
	SRR3591710	White floral bud	8.517
	SRR3591711	White flower	3.270
	SRR3591712	Green floral bud	38.877
	SRR3591713	Yellow flower	0.561
SRP173429	SRR8316895	Juvenile bud stage	15.555
	SRR8316896	Juvenile bud stage	17.753
	SRR8316897	Juvenile bud stage	8.991
	SRR8316894	Third green stage	10.031
	SRR8316900	Third green stage	26.518
	SRR8316901	Third green stage	27.827
	SRR8316898	Complete white stage	1.196
	SRR8316899	Complete white stage	28.089
	SRR8316903	Complete white stage	3.118
	SRR8316902	Silver flowering stage	0.629
	SRR8316904	Silver flowering stage	0.691
	SRR8316905	Silver flowering stage	0.140
	SRR8316906	Gold flowering stage	0.450
	SRR8316907	Gold flowering stage	0.919
	SRR8316908	Gold flowering stage	0.559
SRP132670	SRR6706286	Control	29.356
	SRR6706287	Light intensity 50%	28.657
	SRR6706288	Light intensity 20%	30.301
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.926
	CNS0095593	Slightly white alabastrum(diploid) 2	26.342
	CNS0095594	Slightly white alabastrum(diploid) 3	19.013
	CNS0095595	Whole white alabastrum(diploid) 2	14.055
	CNS0095596	Whole white alabastrum(diploid) 3	24.789
	CNS0095597	Whole white alabastrum(diploid) 4	11.981
	CNS0095598	Silvery flower (diploied) 1	9.925
	CNS0095599	Silvery flower (diploied) 2	10.194
	CNS0095600	Silvery flower (diploied) 3	3.463
	CNS0095601	Golden flower (diploid) 1	5.106
	CNS0095602	Golden flower (diploid) 2	4.440
	CNS0095603	Golden flower (diploid) 3	4.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.329
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.675
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.715
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.978
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.734
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.487
	CNS0095610	Silvery flower (tetraploid) 1	4.165
	CNS0095611	Silvery flower (tetraploid) 2	3.497
	CNS0095612	Silvery flower (tetraploid) 3	1.638
	CNS0095613	Golden flower (tetraploid) 1	0.224
	CNS0095614	Golden flower (tetraploid) 2	2.883
	CNS0095615	Golden flower (tetraploid) 3	0.422
CRA001975	CRR073297	Stem 1	19.291
	CRR073298	Stem 2	19.754
	CRR073299	Stem 3	25.424
	CRR073300	Leaf 1	22.390
	CRR073301	Leaf 2	22.772
	CRR073302	Leaf 3	22.509
	CRR073303	Juvenile bud 1	19.981
	CRR073304	Juvenile bud 2	10.039
	CRR073305	Juvenile bud 3	31.044
	CRR073306	Third green 1	1.103
	CRR073307	Third green 2	1.328
	CRR073308	Third green 3	1.800
	CRR073309	Second white 1	0.240
	CRR073310	Second white 2	0.107
	CRR073311	Second white 3	0.106
	CRR073312	Silver flowering 1	0.216
	CRR073313	Silver flowering 2	0.464
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	6.925
	CRR073316	Gold flowering 2	8.341
	CRR073317	Gold flowering 3	9.575
	CRR073318	Tawny withering 1	11.142
	CRR073319	Tawny withering 2	7.120
	CRR073320	Tawny withering 3	15.607