Gene detail

Detail information of GWHGAAZE032490

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10093.1	2.6844E-126	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q66GR3\|BH130_ARATH	1E-84	Transcription factor bHLH130
trEMBL	tr\|A0A068UR53\|A0A068UR53_COFCA	1E-126	Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313\|EMBL:CDP10093.1}
TAIR10	AT2G42280.1	3E-70	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	3304939	3308216	-
GWHAAZE00000021	mRNA	3304939	3308216	-
GWHAAZE00000021	exon	3308083	3308216	-
GWHAAZE00000021	exon	3307583	3307990	-
GWHAAZE00000021	exon	3306135	3306466	-
GWHAAZE00000021	exon	3305750	3305899	-
GWHAAZE00000021	exon	3305336	3305401	-
GWHAAZE00000021	exon	3305063	3305131	-
GWHAAZE00000021	exon	3304939	3304962	-
GWHAAZE00000021	five_prime_UTR	3308083	3308216	-
GWHAAZE00000021	five_prime_UTR	3307989	3307990	-
GWHAAZE00000021	CDS	3307583	3307988	-
GWHAAZE00000021	CDS	3306135	3306466	-
GWHAAZE00000021	CDS	3305750	3305899	-
GWHAAZE00000021	CDS	3305336	3305401	-
GWHAAZE00000021	CDS	3305063	3305131	-
GWHAAZE00000021	CDS	3304939	3304962	-

Transcript Sequence
>GWHTAAZE032528 AAAATGATGGTCGAATTTTCCCCGAAAAAAGTACCGAATGTATGGTGATTCTCGAGCATTTTCTACTCAATTCAACTCCTATATTTACAAACCCGGAGTTTGCTAGGAAATTAGGGAAACTTCAGAGCCTAAACATATGAATCAGAGCAACTCTGGTTTGTTGAGGTTTCGTTCTGCTCCGAGCTCTCTGTTCTCGAATCTTCCTAATGATAAAGGTAGTGGGGATTCGATCGAGGGCTTTTTGAATCATAGGGATTCAACTAGCCCCGAGTTGACTTCGAGCGATTTGATTTCTCAGAGGTTTGGGGATTTTGGAGGAGATAATAATGACAAGGGTTTATCATCGAAAGGTTCCTGTTTGAATTCGCAGTTGCCGCCGCATTATCCGAGGCAGAGTAGTAAAATTGGAGCAGCACAAATGGGGGCTGTAGATGGGACTTATACGGGTGGGGATAATCAGGGGCAAACTAAAATGGGTTTGGGTCTTATGAGGCAGAGTAGCTCCCCTGCTGGGTTATTTTCTCATCTCACCGCTCACAATGGGTATGCCACAATGAGAGGTGTTGGAAGTTACGGTGCTAGTGGAGATTTAAGCCCGTCTTCAAACATGTTGAAGCGCCAGATGAGCTTCTCATCTGGGGTGGTCCCATCTTCCTTAGGGATGTTGTCTCGTATCTCCGAAACTGAGGGCGAAAACATCGATCAAGGTAGCCCTGATGATGGAAAGCTCGGAAATGGAAGTGGGCCCACTCAGTTTTACTCATCTGATTACCCTTTTGGTTCTTGGAACAACAACTCCTTGCATTTTGCTGAGAACTTTAGTGGCCTTAAGAGGGAATTAGATGATGATGGAAAGATATTTGCTGCTTCTCAGAATGGAGAGGTGCCTACTTTGTCGCACCATTTAAGTTTACCACAGACCTCAGCTGAAATGGAGAAGTTGCTGCAGTTCCAAGATTCTGTCCCTTGTAAGATACGCGCAAAGCGAGGTTGTGCTACTCATCCGAGAAGCATAGCAGAGAGGGTGAGAAGAACACGGATCAGTGAACGAATGAGGAAACTACAAGAGCTTGTGCCTTACATGGATAAGCAAACAAACACAGCAGACATGTTAGATTTGGCTGTTGAGTACATTAAGGACCTCCAAAAACAGTTCAAGACTCTTAGCGATAGTCGAGCCAAC

Network for GWHGAAZE032490

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	292	337	4.30E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.140
	SRR3591706	second leaf	13.657
	SRR3591707	mature leaf	18.963
	SRR3591708	Shoot apex	20.217
	SRR3591709	Stem	9.648
	SRR3591710	White floral bud	0.171
	SRR3591711	White flower	0.744
	SRR3591712	Green floral bud	0.452
	SRR3591713	Yellow flower	0.266
SRP173429	SRR8316895	Juvenile bud stage	1.316
	SRR8316896	Juvenile bud stage	1.145
	SRR8316897	Juvenile bud stage	0.861
	SRR8316894	Third green stage	0.745
	SRR8316900	Third green stage	1.819
	SRR8316901	Third green stage	0.959
	SRR8316898	Complete white stage	0.214
	SRR8316899	Complete white stage	2.219
	SRR8316903	Complete white stage	0.805
	SRR8316902	Silver flowering stage	0.135
	SRR8316904	Silver flowering stage	0.387
	SRR8316905	Silver flowering stage	0.155
	SRR8316906	Gold flowering stage	0.798
	SRR8316907	Gold flowering stage	0.872
	SRR8316908	Gold flowering stage	0.671
SRP132670	SRR6706286	Control	2.169
	SRR6706287	Light intensity 50%	1.512
	SRR6706288	Light intensity 20%	1.452
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.210
	CNS0095593	Slightly white alabastrum(diploid) 2	1.360
	CNS0095594	Slightly white alabastrum(diploid) 3	1.094
	CNS0095595	Whole white alabastrum(diploid) 2	1.256
	CNS0095596	Whole white alabastrum(diploid) 3	1.103
	CNS0095597	Whole white alabastrum(diploid) 4	1.143
	CNS0095598	Silvery flower (diploied) 1	5.815
	CNS0095599	Silvery flower (diploied) 2	2.137
	CNS0095600	Silvery flower (diploied) 3	0.660
	CNS0095601	Golden flower (diploid) 1	3.222
	CNS0095602	Golden flower (diploid) 2	2.795
	CNS0095603	Golden flower (diploid) 3	2.638
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.737
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.178
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.259
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.190
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.601
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.168
	CNS0095610	Silvery flower (tetraploid) 1	0.769
	CNS0095611	Silvery flower (tetraploid) 2	0.798
	CNS0095612	Silvery flower (tetraploid) 3	0.590
	CNS0095613	Golden flower (tetraploid) 1	1.575
	CNS0095614	Golden flower (tetraploid) 2	1.781
	CNS0095615	Golden flower (tetraploid) 3	0.603
CRA001975	CRR073297	Stem 1	5.659
	CRR073298	Stem 2	5.941
	CRR073299	Stem 3	5.249
	CRR073300	Leaf 1	5.207
	CRR073301	Leaf 2	4.258
	CRR073302	Leaf 3	3.598
	CRR073303	Juvenile bud 1	2.974
	CRR073304	Juvenile bud 2	1.971
	CRR073305	Juvenile bud 3	4.086
	CRR073306	Third green 1	0.592
	CRR073307	Third green 2	0.836
	CRR073308	Third green 3	0.395
	CRR073309	Second white 1	0.461
	CRR073310	Second white 2	0.042
	CRR073311	Second white 3	0.613
	CRR073312	Silver flowering 1	0.048
	CRR073313	Silver flowering 2	0.554
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	43.262
	CRR073316	Gold flowering 2	55.152
	CRR073317	Gold flowering 3	48.128
	CRR073318	Tawny withering 1	6.307
	CRR073319	Tawny withering 2	6.018
	CRR073320	Tawny withering 3	5.664