Gene detail

Detail information of GWHGAAZE032482

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009611363.1	0	PREDICTED: transcription factor HBP-1b(c38)-like isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|O24160\|TGA21_TOBAC	7E-128	TGACG-sequence-specific DNA-binding protein TGA-2.1
trEMBL	tr\|Q52MZ2\|Q52MZ2_TOBAC	0	TGA10 transcription factor {ECO:0000313\|EMBL:AAY15214.1}
TAIR10	AT5G06839.3	3E-156	bZIP transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	3189336	3196942	+
GWHAAZE00000021	mRNA	3189336	3196942	+
GWHAAZE00000021	exon	3189336	3189649	+
GWHAAZE00000021	exon	3189773	3189870	+
GWHAAZE00000021	exon	3190360	3190439	+
GWHAAZE00000021	exon	3190569	3190703	+
GWHAAZE00000021	exon	3191233	3191301	+
GWHAAZE00000021	exon	3191450	3191509	+
GWHAAZE00000021	exon	3191670	3191747	+
GWHAAZE00000021	exon	3191886	3191940	+
GWHAAZE00000021	exon	3192221	3192492	+
GWHAAZE00000021	exon	3194244	3194483	+
GWHAAZE00000021	exon	3196793	3196942	+
GWHAAZE00000021	CDS	3189336	3189649	+
GWHAAZE00000021	CDS	3189773	3189870	+
GWHAAZE00000021	CDS	3190360	3190439	+
GWHAAZE00000021	CDS	3190569	3190703	+
GWHAAZE00000021	CDS	3191233	3191301	+
GWHAAZE00000021	CDS	3191450	3191509	+
GWHAAZE00000021	CDS	3191670	3191747	+
GWHAAZE00000021	CDS	3191886	3191940	+
GWHAAZE00000021	CDS	3192221	3192492	+
GWHAAZE00000021	CDS	3194244	3194483	+
GWHAAZE00000021	CDS	3196793	3196942	+

Transcript Sequence
>GWHTAAZE032520 ATGGGTTTTGAGAGAAGTGTAGTTCAAGGTTCAACTGAGCAAGAAATTGAGCTATTTGCTGGTCCTGTTACTTCCACTACTACTTTCATGGCTACTACAAACAGACCCAACAATAACAACCACCACCATCATCATCAACTTCAAGTGGTACAAGATCATCAGCAGCAAGTCCAACCACTTACGCAGCAAAATCATCATCACCCATTTCAACATCATCATCATCAGCAGAATCAAAATCAAAATCAAAATAATAATCAGATTTCTTTCGGCATGATGCAATCCTCTTCGTCATCAATGATCCCTAGCAACTTCATAAACAAAGATAGTGGAGCTTATGATTTGGGTGAATTAGATCAAGCTCTGTTTCTTTACCTTGATGGACAAGACCCATCAGCAATCCAAGAGCATAGGCAGAATTCTGGGATGAGGCCTCCAACTTTGAACATTTTCCCATCTCAGCCTATGCATGTAGAGCCATCATCATCGACTAAGGTGAGTACTGGATTAGTTTCTTCTTCTCCAGCTACTAGTGGTTCAAAAAGATCATCTGAGCCGTCCATGGAGTTGGCCAATAACCCCAAAAATGATCAGCCTTCTCCTGCTCCTCAACCAGCCAAAGCTGTCAAGCGCGAAGGAAATCGCAAAGGGCCAACATCAAGTTCGGAACATGAAGGACCCAAAACACCAGACCCTAAGACATTGAGAAGGCTTGCTCAGAATAGGGAGGCAGCTAGAAAAAGCAGACTTAGGAAAAAGGCTTATGTTCAGCAGCTAGAGTCAAGCAGGATAAAGCTTACTCAACTGGAACAAGAACTACAAAGAGCTAGAGCCCAAGGAGTTTATCTTGGTGGCGGTGGTGTTTTAGGGCCAGACCAAGGCCTTCCTCTTGATGCGGCGGTGTTTGACATGGAGTATGCTAGGTGGATCGATGACCACCACCGTCTCATGTGCGAGCTCCGGGCAGCGGTGCAAGAACACTTGCCAGAAAATGAGCTCCGGTTGTTTGTGGACACATGTTTGGCGCATTATGATGAGGTGATGAACCTCAAAAGTATGGTCGCTAAATCCGATGTGTTTCATCTCTTCTCCGGCGCATGGAAGACTCCAGCCGAGCGTTGCTTCATGTGGATGGGAGGGTTCCGACCATCAGAGATCATCAAGATTATTGTGAACCAAATCGAGCCATTAACTGAACAACAACTATTGGGTGTATGCGGATTACAACAGTCGACTCAAGAGGCTGAAGAGGCTCTATCTCAAGGGCTGGATGCTCTTAATCAGTCTCTCTCGGACACCATTGCTTCGGACTCACTCAGCTGCACCCCAAACATGGCTAACTACATGGGTCAAATGGCTCTAGCCATGAACAAGCTCTCCACCCTTGAGGGTTTTGTTAGACAGGCAGATAATTTGAGGCACCAAACAATTCATCGATTGCATCAAATTCTGACGACTCGTCAAGCAGCAAGGTGTTTGTTGGCAATTGCAGAGTACTTCCATCGCCTCCGAGCTCTCAGCTCTCTCTGGGTAGCACGCCCCCGACAAGATTAA

Network for GWHGAAZE032482

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	232	272	3.60E-08
PF14144.7	DOG1	316	390	3.40E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
K14431	TGA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.012
	SRR3591711	White flower	0.308
	SRR3591712	Green floral bud	0.641
	SRR3591713	Yellow flower	0.294
SRP173429	SRR8316895	Juvenile bud stage	0.631
	SRR8316896	Juvenile bud stage	0.488
	SRR8316897	Juvenile bud stage	0.337
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.197
	SRR8316901	Third green stage	0.185
	SRR8316898	Complete white stage	0.044
	SRR8316899	Complete white stage	0.117
	SRR8316903	Complete white stage	0.130
	SRR8316902	Silver flowering stage	0.024
	SRR8316904	Silver flowering stage	0.170
	SRR8316905	Silver flowering stage	0.042
	SRR8316906	Gold flowering stage	0.262
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.138
SRP132670	SRR6706286	Control	0.344
	SRR6706287	Light intensity 50%	0.157
	SRR6706288	Light intensity 20%	0.233
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.122
	CNS0095593	Slightly white alabastrum(diploid) 2	0.131
	CNS0095594	Slightly white alabastrum(diploid) 3	0.227
	CNS0095595	Whole white alabastrum(diploid) 2	0.028
	CNS0095596	Whole white alabastrum(diploid) 3	0.156
	CNS0095597	Whole white alabastrum(diploid) 4	0.093
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.080
	CNS0095600	Silvery flower (diploied) 3	0.055
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.220
	CNS0095603	Golden flower (diploid) 3	0.157
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.204
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.020
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.374
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.091
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.298
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.405
	CNS0095610	Silvery flower (tetraploid) 1	0.261
	CNS0095611	Silvery flower (tetraploid) 2	0.191
	CNS0095612	Silvery flower (tetraploid) 3	0.110
	CNS0095613	Golden flower (tetraploid) 1	0.265
	CNS0095614	Golden flower (tetraploid) 2	0.099
	CNS0095615	Golden flower (tetraploid) 3	0.103
CRA001975	CRR073297	Stem 1	1.935
	CRR073298	Stem 2	1.486
	CRR073299	Stem 3	1.838
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.052
	CRR073302	Leaf 3	0.434
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.035
	CRR073306	Third green 1	0.093
	CRR073307	Third green 2	0.032
	CRR073308	Third green 3	0.205
	CRR073309	Second white 1	0.332
	CRR073310	Second white 2	0.608
	CRR073311	Second white 3	0.433
	CRR073312	Silver flowering 1	0.787
	CRR073313	Silver flowering 2	0.207
	CRR073314	Silver flowering 3	1.347
	CRR073315	Gold flowering 1	0.001
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.924
	CRR073319	Tawny withering 2	0.638
	CRR073320	Tawny withering 3	0.831