Gene detail

Detail information of GWHGAAZE032475

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI30038.3	0	unnamed protein product [Vitis vinifera]
COG	YP_004163702.1	3E-22	hypothetical protein
Swissprot	tr\|Q9FG24\|SRF2_ARATH	0	Protein STRUBBELIG-RECEPTOR FAMILY 2 (Precursor)
trEMBL	tr\|F6HLK6\|F6HLK6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55262.1}
TAIR10	AT5G06820.1	0	STRUBBELIG-receptor family 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	2974889	2981807	+
GWHAAZE00000021	mRNA	2974889	2981807	+
GWHAAZE00000021	exon	2974889	2974925	+
GWHAAZE00000021	exon	2975261	2975393	+
GWHAAZE00000021	exon	2975485	2975556	+
GWHAAZE00000021	exon	2975659	2975724	+
GWHAAZE00000021	exon	2975824	2975895	+
GWHAAZE00000021	exon	2975976	2976047	+
GWHAAZE00000021	exon	2976737	2976808	+
GWHAAZE00000021	exon	2976889	2976954	+
GWHAAZE00000021	exon	2977033	2977098	+
GWHAAZE00000021	exon	2977173	2977510	+
GWHAAZE00000021	exon	2978151	2978422	+
GWHAAZE00000021	exon	2979396	2979661	+
GWHAAZE00000021	exon	2979804	2979951	+
GWHAAZE00000021	exon	2980627	2980769	+
GWHAAZE00000021	exon	2980869	2981025	+
GWHAAZE00000021	exon	2981565	2981807	+
GWHAAZE00000021	CDS	2974889	2974925	+
GWHAAZE00000021	CDS	2975261	2975393	+
GWHAAZE00000021	CDS	2975485	2975556	+
GWHAAZE00000021	CDS	2975659	2975724	+
GWHAAZE00000021	CDS	2975824	2975895	+
GWHAAZE00000021	CDS	2975976	2976047	+
GWHAAZE00000021	CDS	2976737	2976808	+
GWHAAZE00000021	CDS	2976889	2976954	+
GWHAAZE00000021	CDS	2977033	2977098	+
GWHAAZE00000021	CDS	2977173	2977510	+
GWHAAZE00000021	CDS	2978151	2978422	+
GWHAAZE00000021	CDS	2979396	2979661	+
GWHAAZE00000021	CDS	2979804	2979951	+
GWHAAZE00000021	CDS	2980627	2980769	+
GWHAAZE00000021	CDS	2980869	2981025	+
GWHAAZE00000021	CDS	2981565	2981750	+
GWHAAZE00000021	three_prime_UTR	2981751	2981807	+

Transcript Sequence
>GWHTAAZE032513 ATGAGAGTGATGATTTGGGTTCACCACCATGACATAGTTCAAGCTCTGCAAGATCTTTACAGAGCTCTAAACTGTTCATCACAGCTCCAAGCATGGAGATTAGATGGGGGAGACCCATGTGAGGAATCGTGGAAAGGAGTTTCATGCAATGGATCATCAGTTATAACAATTAAAATTCCCGACCTAAACCTCACCGGATATCTTGGTTTCCAGCTCTCTAATCTTCACAATTTGAAGGAACTGGATGTTAGCTCCAATAAAATCAAGGGTGAAATTCCATACAGCTTACCTCCTAATATCACACACTTAAACTTGGCATACAACAATTTTAGCCAAAGTATACCCTACTCCTTATCTTGCTTGAAAAACCTTCAACATGTGAATGTGAGCCACAATTCGTTATCTGGTTCCATTGGGAATATATTCACTAGCCTCACAGATCTAAGAGAAATGGATTTGTCATACAACAATTTCACTGGAGCTCTGCCTACTTCATTTTTATCTTTGACAAATCTTACAAAATTGTTCTTGCAAAGCAACGAATTCACCGGATCAGTAGTCTTTTTGATTGGTCTCCCGCTATCTGATCTGAATATCCAAGATAACTATTTTAGTGGCGTATTACCATATCAATTCCAATCTATACACAACCTATGGATTGGAGGTAATCGGTTCGACAAAGGAATTAACTATCCATCATGGGATTTTCCTTTGGAAAATATACCGAATGAGCAGAATACAAGTATTACTAGTCCACCAAGTACAGAGTCGAGTGCCATTGAGAGCTACCCTTCTTCTCATAAAGAAGGTAAAAAAAGGAAGAAAGAAATGGGCCCCGGAGGAATAGCTCTTATGATTGGTGGGGTTACCCTAGTGGCATTCTGTGCAACACTCGTGATTGTGATTCACATTCACCGGTCAAGAGCACTAAAGCTCAAAAGATTGGAGAACAGTGAGGCCTCAAGGTATTCTCTTCCAATCAGCACAGCCAGAGAGATCTCTTCTACTCCTCAAGTAGCAAGCCCAGCACTCTCAGCTATCCACACTCCTCCTCAGAGTGCTCCAATGCATTTACCACCAATTCGGGTGAGAACTTTGGGAGTATCAAGAAGAAGAAGTTTCTCTATGAAGAAAAGGATGCCGGTAGGTGTAAAACTCTACACTGTGGCCGAACTTCAGTTAGCAACTAACTTCTTCAGTGAACACAACCTTCTTGGAGAGGGTTCCCTTGGTTCTGTTTACAAAGCTGAGTTCCCTAATGGAAAAATTTCTGTGGTGAAGAAAATTGAAATGGTGCCACTCTCAATGAGAGAAGAAGATCAGTTCATGGATGTGATACGGAATGCTTCCCGTGTGAGGCACCTGAACATTGTAAAACTCATTGGGTACTGTGCAGAACATGGACAGCATCTCCTCGTTTATGAGTATGTGAGAAATTTGTCTCTGGCCAATGCTTTGCACTGTGAAGCATTCATGCCTCTTTCTTGGGGTCTCCGTGTTCGAATTGCTCTTGGTATTGCTCGGGCTTTAAACTATTTGCATTCCACATGCTTGCCTCCAGTGGCTCATAGCAACTTAAAGGCAGCTAACATTTTACTTGACGAAGATCTTATGCCTCGCATTTGTGACTGCGGGCTAGCTGTTCTGAAGCCTCTTACCAGCAACACTGTTAAACTTAGGGCGTCTGAAATGGCTATATGTGATAGAGGCTACATTGCACCTGATCACATCCAACTGGGAATTGACAACTGTACAAAGGGTGACATTTATGCCTTTGGAGTGTTGCTTTTAGAGCTGCTTTCTGGAAGGAAGCCTTTTGACAGATCGAAACCAAGAGAAGAGCAATACCTGGTGAAATGGGCTTCATCCCAGCTTCATGTCAATGAATCATTGGAACAGATGGTTGATCCAGCCATTAAGAAAACAATTTCCTCCAAGGCTCTCTCCCGGTTTGCTGACATTGTCTCCCTTTGTATTCAGCCCGAGAAGGAATTCAGACCACCAATGTCAGAAATAGTGGAATCGCTTGTGTTTCTTTTACAACAGAACCGAATAAGCAGTAGCATTTCAGCTGAGGGTCCTGAAGTTGACCCTTTGAACAGGTCTTTCCGCTCCACTGACACGCAGTTATTTTGCTCGCCTCCCGTCAGCTACGTATCCATTTGATCTAAATCTGTACAATCAGGTCAATTAGTTCTTTCATTTTTTCTTCATTTAAAAGCC

Network for GWHGAAZE032475

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	13	50	4.70E-06
PF13855.7	LRR_8	77	134	2.70E-06
PF13855.7	LRR_8	141	181	2.30E-06
PF00069.26	Pkinase	400	675	2.60E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.348
	SRR3591706	second leaf	3.217
	SRR3591707	mature leaf	0.510
	SRR3591708	Shoot apex	3.020
	SRR3591709	Stem	11.753
	SRR3591710	White floral bud	1.976
	SRR3591711	White flower	1.373
	SRR3591712	Green floral bud	3.264
	SRR3591713	Yellow flower	0.196
SRP173429	SRR8316895	Juvenile bud stage	1.622
	SRR8316896	Juvenile bud stage	1.769
	SRR8316897	Juvenile bud stage	0.828
	SRR8316894	Third green stage	1.402
	SRR8316900	Third green stage	2.136
	SRR8316901	Third green stage	2.560
	SRR8316898	Complete white stage	0.081
	SRR8316899	Complete white stage	0.850
	SRR8316903	Complete white stage	0.331
	SRR8316902	Silver flowering stage	0.179
	SRR8316904	Silver flowering stage	0.123
	SRR8316905	Silver flowering stage	0.081
	SRR8316906	Gold flowering stage	0.049
	SRR8316907	Gold flowering stage	0.004
	SRR8316908	Gold flowering stage	0.109
SRP132670	SRR6706286	Control	0.446
	SRR6706287	Light intensity 50%	0.385
	SRR6706288	Light intensity 20%	0.463
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.992
	CNS0095593	Slightly white alabastrum(diploid) 2	4.011
	CNS0095594	Slightly white alabastrum(diploid) 3	2.028
	CNS0095595	Whole white alabastrum(diploid) 2	1.152
	CNS0095596	Whole white alabastrum(diploid) 3	1.123
	CNS0095597	Whole white alabastrum(diploid) 4	0.655
	CNS0095598	Silvery flower (diploied) 1	0.283
	CNS0095599	Silvery flower (diploied) 2	0.103
	CNS0095600	Silvery flower (diploied) 3	0.206
	CNS0095601	Golden flower (diploid) 1	0.051
	CNS0095602	Golden flower (diploid) 2	0.122
	CNS0095603	Golden flower (diploid) 3	0.100
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.483
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.015
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.570
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.733
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.792
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.501
	CNS0095610	Silvery flower (tetraploid) 1	0.092
	CNS0095611	Silvery flower (tetraploid) 2	0.090
	CNS0095612	Silvery flower (tetraploid) 3	0.212
	CNS0095613	Golden flower (tetraploid) 1	0.037
	CNS0095614	Golden flower (tetraploid) 2	0.069
	CNS0095615	Golden flower (tetraploid) 3	0.220
CRA001975	CRR073297	Stem 1	1.679
	CRR073298	Stem 2	1.590
	CRR073299	Stem 3	1.090
	CRR073300	Leaf 1	1.416
	CRR073301	Leaf 2	2.334
	CRR073302	Leaf 3	0.959
	CRR073303	Juvenile bud 1	0.092
	CRR073304	Juvenile bud 2	0.024
	CRR073305	Juvenile bud 3	0.084
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.144
	CRR073308	Third green 3	0.077
	CRR073309	Second white 1	0.046
	CRR073310	Second white 2	0.335
	CRR073311	Second white 3	0.024
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.079
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.436
	CRR073316	Gold flowering 2	1.311
	CRR073317	Gold flowering 3	0.205
	CRR073318	Tawny withering 1	3.417
	CRR073319	Tawny withering 2	1.977
	CRR073320	Tawny withering 3	2.453