Gene detail

Detail information of GWHGAAZE032472

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009603787.1	3.22516E-63	PREDICTED: uncharacterized protein LOC104098688 [Nicotiana tomentosiformis]
Swissprot	tr\|Q8GUN5\|PHL1_ARATH	1E-26	Protein PHR1-LIKE 1
trEMBL	tr\|B9SWI3\|B9SWI3_RICCO	5E-63	Transcription factor, putative {ECO:0000313\|EMBL:EEF32013.1}
TAIR10	AT5G06800.1	2E-32	myb-like HTH transcriptional regulator family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	2904774	2906268	+
GWHAAZE00000021	mRNA	2904774	2906268	+
GWHAAZE00000021	exon	2904774	2905367	+
GWHAAZE00000021	exon	2905746	2905908	+
GWHAAZE00000021	exon	2906029	2906105	+
GWHAAZE00000021	exon	2906191	2906268	+
GWHAAZE00000021	CDS	2904774	2905367	+
GWHAAZE00000021	CDS	2905746	2905908	+
GWHAAZE00000021	CDS	2906029	2906105	+
GWHAAZE00000021	CDS	2906191	2906268	+

Transcript Sequence
>GWHTAAZE032510 ATGAACACCCAAAAGATTGCTTACCAAGAAAGACCTCTACAAAATCATGGGTTCACAACAGATTACACAATAGATCACTACCACAGCCCATTTTCTCGCATGGGTATTTTTGTACAATCACCATCGGCTATGGAAGCAAGCTCACAAGAACAAAGCTATGGAAATTCAAGCTCATCAAGCACTATTATGAACCGGATCGGATCACCCGCCTCTGCTTTTTACGCAACCGAGAGGTATATGGGATTTCAGCAGTATGACTCTCAAACTGGGAACCAAAATTTATCTCCTCGTTTGTCAAAGAATTATGATCAACAATTAGTCCCCGCATATCAGCAACAGCAGATGGCATACACGAATGGATATTTTGGGGACGTGCTAGATCAATCCAAACGTGCCCTTGAACCGGCTGCCAAGTCTGCTTTTTGTGGTGCAGACCAGTACTATGATTCTTCGGAAAAGTCTTGCCGCGAAAGGGAGTGTATTTTGCAGCTGAAGAATAAGTTGATGGGCGATCTTGATGATTCAGATAGGAATCAAGAAATTAGTGTAAGTTCTTTTGCAATTCATTTTTTTTTTTGTATTGTTTTCTTTGGAGCCTATGGTTCGCAAAGTGGTAATTCAAGGCAACTTTCAAGGCCTCCAATTGGTGGTTCTTTCAATTCTGGAGCTCTAATCTCGAGCAAAACGCGTATTAGATGGACTCAAGATCTTCATGATCGATTCGTCGAGTGTGTGAATCGCCTAGGTGGAGCTGAAAAGGCGACACCAAAGGCAATATTGAGGCTGATGGAGTCGGATGGATTGACTATTTTTCATGTGAAGAGTCATTTGCAGAAATATCGAATTGCAAAGTACATGCCAGAATCTGCTGAAGGTAAATCTTCATTAATTAGTCCCTTCAATTATTGTTGA

Network for GWHGAAZE032472

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	232	281	1.80E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.083
	SRR3591706	second leaf	2.158
	SRR3591707	mature leaf	10.925
	SRR3591708	Shoot apex	0.874
	SRR3591709	Stem	6.061
	SRR3591710	White floral bud	14.153
	SRR3591711	White flower	12.822
	SRR3591712	Green floral bud	8.772
	SRR3591713	Yellow flower	3.042
SRP173429	SRR8316895	Juvenile bud stage	0.081
	SRR8316896	Juvenile bud stage	0.272
	SRR8316897	Juvenile bud stage	0.373
	SRR8316894	Third green stage	0.289
	SRR8316900	Third green stage	0.539
	SRR8316901	Third green stage	0.618
	SRR8316898	Complete white stage	2.138
	SRR8316899	Complete white stage	7.410
	SRR8316903	Complete white stage	4.875
	SRR8316902	Silver flowering stage	1.862
	SRR8316904	Silver flowering stage	2.887
	SRR8316905	Silver flowering stage	1.197
	SRR8316906	Gold flowering stage	1.869
	SRR8316907	Gold flowering stage	2.499
	SRR8316908	Gold flowering stage	1.691
SRP132670	SRR6706286	Control	1.943
	SRR6706287	Light intensity 50%	2.176
	SRR6706288	Light intensity 20%	2.163
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.832
	CNS0095593	Slightly white alabastrum(diploid) 2	0.876
	CNS0095594	Slightly white alabastrum(diploid) 3	0.796
	CNS0095595	Whole white alabastrum(diploid) 2	0.501
	CNS0095596	Whole white alabastrum(diploid) 3	0.099
	CNS0095597	Whole white alabastrum(diploid) 4	0.820
	CNS0095598	Silvery flower (diploied) 1	6.324
	CNS0095599	Silvery flower (diploied) 2	4.422
	CNS0095600	Silvery flower (diploied) 3	3.195
	CNS0095601	Golden flower (diploid) 1	1.180
	CNS0095602	Golden flower (diploid) 2	1.099
	CNS0095603	Golden flower (diploid) 3	1.319
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.233
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.189
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.884
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.533
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.834
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.685
	CNS0095610	Silvery flower (tetraploid) 1	2.049
	CNS0095611	Silvery flower (tetraploid) 2	0.799
	CNS0095612	Silvery flower (tetraploid) 3	1.038
	CNS0095613	Golden flower (tetraploid) 1	2.868
	CNS0095614	Golden flower (tetraploid) 2	1.653
	CNS0095615	Golden flower (tetraploid) 3	1.561
CRA001975	CRR073297	Stem 1	0.313
	CRR073298	Stem 2	0.305
	CRR073299	Stem 3	0.383
	CRR073300	Leaf 1	1.947
	CRR073301	Leaf 2	0.808
	CRR073302	Leaf 3	0.903
	CRR073303	Juvenile bud 1	3.277
	CRR073304	Juvenile bud 2	1.308
	CRR073305	Juvenile bud 3	2.077
	CRR073306	Third green 1	1.426
	CRR073307	Third green 2	1.892
	CRR073308	Third green 3	1.150
	CRR073309	Second white 1	0.050
	CRR073310	Second white 2	0.344
	CRR073311	Second white 3	0.741
	CRR073312	Silver flowering 1	0.728
	CRR073313	Silver flowering 2	0.586
	CRR073314	Silver flowering 3	0.841
	CRR073315	Gold flowering 1	2.225
	CRR073316	Gold flowering 2	4.527
	CRR073317	Gold flowering 3	3.302
	CRR073318	Tawny withering 1	5.145
	CRR073319	Tawny withering 2	9.154
	CRR073320	Tawny withering 3	5.573