Detail information of GWHGAAZE032466


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009760270.12.6207E-177PREDICTED: uncharacterized protein LOC104212640 [Nicotiana sylvestris]
trEMBLtr|A0A061EYH0|A0A061EYH0_THECC4E-176DNA-binding bromodomain-containing protein, putative {ECO:0000313|EMBL:EOY09477.1}
TAIR10AT2G42150.12E-69DNA-binding bromodomain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000021gene28310202837473-
GWHAAZE00000021mRNA28310202837473-
GWHAAZE00000021exon28310202832024-
GWHAAZE00000021exon28363092836975-
GWHAAZE00000021exon28371302837473-
GWHAAZE00000021CDS28371302837473-
GWHAAZE00000021CDS28363092836975-
GWHAAZE00000021CDS28310202832024-
Transcript Sequence

Network for GWHGAAZE032466

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding15665.80E-08
PF00439.26Bromodomain3193931.40E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.899
SRR3591706second leaf11.298
SRR3591707mature leaf13.491
SRR3591708Shoot apex23.050
SRR3591709Stem20.865
SRR3591710White floral bud20.101
SRR3591711White flower22.108
SRR3591712Green floral bud27.083
SRR3591713Yellow flower19.205
SRP173429 SRR8316895Juvenile bud stage 13.105
SRR8316896Juvenile bud stage 20.107
SRR8316897Juvenile bud stage 7.526
SRR8316894Third green stage 9.597
SRR8316900Third green stage 23.781
SRR8316901Third green stage 22.664
SRR8316898Complete white stage 10.379
SRR8316899Complete white stage 27.605
SRR8316903Complete white stage 16.218
SRR8316902Silver flowering stage6.508
SRR8316904Silver flowering stage10.620
SRR8316905Silver flowering stage5.876
SRR8316906Gold flowering stage 14.850
SRR8316907Gold flowering stage 12.825
SRR8316908Gold flowering stage 16.672
SRP132670SRR6706286Control26.538
SRR6706287Light intensity 50%25.132
SRR6706288Light intensity 20%25.569
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.568
CNS0095593Slightly white alabastrum(diploid) 218.864
CNS0095594Slightly white alabastrum(diploid) 320.687
CNS0095595Whole white alabastrum(diploid) 216.676
CNS0095596Whole white alabastrum(diploid) 320.360
CNS0095597Whole white alabastrum(diploid) 416.682
CNS0095598Silvery flower (diploied) 114.879
CNS0095599Silvery flower (diploied) 213.415
CNS0095600Silvery flower (diploied) 322.404
CNS0095601Golden flower (diploid) 112.806
CNS0095602Golden flower (diploid) 220.946
CNS0095603Golden flower (diploid) 322.414
CNS0095604Slightly white alabastrum(tetraploid) 126.686
CNS0095605Slightly white alabastrum(tetraploid) 222.922
CNS0095606Slightly white alabastrum(tetraploid) 334.084
CNS0095607Whole white alabastrum(tetraploid) 122.100
CNS0095608Whole white alabastrum(tetraploid) 217.273
CNS0095609Whole white alabastrum(tetraploid) 323.393
CNS0095610Silvery flower (tetraploid) 121.177
CNS0095611Silvery flower (tetraploid) 223.903
CNS0095612Silvery flower (tetraploid) 321.798
CNS0095613Golden flower (tetraploid) 113.699
CNS0095614Golden flower (tetraploid) 220.048
CNS0095615Golden flower (tetraploid) 320.852
CRA001975CRR073297Stem 126.999
CRR073298Stem 229.441
CRR073299Stem 328.547
CRR073300Leaf 133.279
CRR073301Leaf 228.195
CRR073302Leaf 327.546
CRR073303Juvenile bud 126.515
CRR073304Juvenile bud 222.255
CRR073305Juvenile bud 324.586
CRR073306Third green 116.455
CRR073307Third green 213.485
CRR073308Third green 314.909
CRR073309Second white 111.874
CRR073310Second white 215.178
CRR073311Second white 314.142
CRR073312Silver flowering 112.102
CRR073313Silver flowering 210.300
CRR073314Silver flowering 310.791
CRR073315Gold flowering 17.838
CRR073316Gold flowering 28.165
CRR073317Gold flowering 35.134
CRR073318Tawny withering 115.045
CRR073319Tawny withering 211.194
CRR073320Tawny withering 315.031