Gene detail

Detail information of GWHGAAZE032457

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002322669.1	0	hypothetical protein POPTR_0016s04600g [Populus trichocarpa]
COG	YP_004652861.1	7E-141	enoyl-ACP reductase
Swissprot	tr\|Q9SLA8\|FABI_ARATH	0	Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic (Precursor)
trEMBL	tr\|B9IHZ8\|B9IHZ8_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEF04430.1}
TAIR10	AT2G05990.2	6E-145	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	2657054	2662284	+
GWHAAZE00000021	mRNA	2657054	2662284	+
GWHAAZE00000021	exon	2657054	2657336	+
GWHAAZE00000021	exon	2657750	2657859	+
GWHAAZE00000021	exon	2657962	2658017	+
GWHAAZE00000021	exon	2658099	2658183	+
GWHAAZE00000021	exon	2658315	2658362	+
GWHAAZE00000021	exon	2659338	2659412	+
GWHAAZE00000021	exon	2659484	2659755	+
GWHAAZE00000021	exon	2660403	2660454	+
GWHAAZE00000021	exon	2660594	2660651	+
GWHAAZE00000021	exon	2661255	2661353	+
GWHAAZE00000021	exon	2662133	2662284	+
GWHAAZE00000021	CDS	2657054	2657336	+
GWHAAZE00000021	CDS	2657750	2657859	+
GWHAAZE00000021	CDS	2657962	2658017	+
GWHAAZE00000021	CDS	2658099	2658183	+
GWHAAZE00000021	CDS	2658315	2658362	+
GWHAAZE00000021	CDS	2659338	2659412	+
GWHAAZE00000021	CDS	2659484	2659755	+
GWHAAZE00000021	CDS	2660403	2660454	+
GWHAAZE00000021	CDS	2660594	2660651	+
GWHAAZE00000021	CDS	2661255	2661353	+
GWHAAZE00000021	CDS	2662133	2662284	+

Transcript Sequence
>GWHTAAZE032495 ATGGACATGGCTACGACTGCAACTCCTACCATGCATATTGCAACCACAAAGCCTTGCATTTCTGCTTCTCGGAAAGTTTTCAAGTCAAGCTTTGCAGTTATGGGTACTGAAAGTAGGGGATCATCTTGTACGAGACTTAGTAGCTCTTATCACATCTCATCAAAGATGCCATTGTCTCAGAGTCTCACCTCCACTCCTCGAAAATTTGAGAGGATTGTTACAAAAGCAATGTCTGAAGCCAGTGAACTCAAGCCTCTCCCAGGATTGCCTATTGATTTGAGAGGTAAGAGGGCATTTATTGCTGGTATAGCTGATGATAACGGATATGGATGGGCAATAGCAAAATCTCTCGCTGCTGCTGGTGCTGAAATTCTTGTTGGTACATGGGTGCCTGCACTTAACATTTTTGAGACCAGTCTACGACGTGGCAAATTTGATGAATCACGAGTGTTGCCAGACGGTTCATTGATGGAAATCACAAAAGTATATCCATTGGATGCAGTTTATGATACTCCCGAGGACGTTCCTGAAGATGTTAAATCAAATAAACGCTATGCAGGGTCTTCCAAGTGGACTGTTAAGGAAGTTGCTGAATCCGTGAAAGAGGATTTTGGCACCATTGACATCCTTGTACACTCACTTGCCAATGGACCTGAGGTGAGTAAATCACTCTTGGAGACATCGAGATATGGATATCTTACAGCCATCTCTGCATCGAGTTATTCCTTTATTTCTTTGCTAAAGCATTTTGTTCCAATAATAAATCCAGGTCCTGTTCTCTTCAATCTATCTTTTCTAGTGCTGCCATTAGAAGCAAAAATAGAAAACAATTCAGCTTTGTTACTAAAAGTTTTGACTGTGGGTGTTGATGTTGCAGGTGGTGCTACAATATCTCTAACCTACATTGCTTCTGAAAGGATCATACCAGGATATGGTGGAGGCATGAGTTCAGCGAAGGCTGCTCTGGAGAGTGACACACAAGTGCTGGCTTTTGAAGCTGGAAGAAAACACAAAGTCAGAGTCAACACTATATCTGCAGGCCCCTTGAGAAGTCGTGCAGCAAAAGCTATTGGTTTTATCGATATGATGATTGATTACTCGTCAGAGAATGCACCCTTACAGAAAGAACTGTCTGCCGAGGAGGTGGGGAATGCGGCAGCTTTTCTGGCATCGCCATTGGCTTCAGCCATAACAGGTGCAGTCGTGTATGTTGACAACGGCTTGAACGCGATGGGAGTGGGAGTTGACAGCCCAGTTTTCGAAAATCTTGACATCCCAAAAAGCAGCTAG

Network for GWHGAAZE032457

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.7	adh_short_C2	192	266	8.50E-11
PF13561.7	adh_short_C2	291	409	5.40E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00208	fabI	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780
		Prodigiosin biosynthesis	map00333

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004318	molecular_function	enoyl-[acyl-carrier-protein] reductase (NADH) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.662
	SRR3591706	second leaf	15.662
	SRR3591707	mature leaf	1.140
	SRR3591708	Shoot apex	17.464
	SRR3591709	Stem	2.396
	SRR3591710	White floral bud	12.407
	SRR3591711	White flower	12.291
	SRR3591712	Green floral bud	18.216
	SRR3591713	Yellow flower	14.158
SRP173429	SRR8316895	Juvenile bud stage	17.489
	SRR8316896	Juvenile bud stage	29.071
	SRR8316897	Juvenile bud stage	13.417
	SRR8316894	Third green stage	9.331
	SRR8316900	Third green stage	28.603
	SRR8316901	Third green stage	27.102
	SRR8316898	Complete white stage	9.712
	SRR8316899	Complete white stage	21.528
	SRR8316903	Complete white stage	13.653
	SRR8316902	Silver flowering stage	9.217
	SRR8316904	Silver flowering stage	13.407
	SRR8316905	Silver flowering stage	6.397
	SRR8316906	Gold flowering stage	17.469
	SRR8316907	Gold flowering stage	16.817
	SRR8316908	Gold flowering stage	20.032
SRP132670	SRR6706286	Control	17.159
	SRR6706287	Light intensity 50%	19.054
	SRR6706288	Light intensity 20%	21.314
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.786
	CNS0095593	Slightly white alabastrum(diploid) 2	25.780
	CNS0095594	Slightly white alabastrum(diploid) 3	28.520
	CNS0095595	Whole white alabastrum(diploid) 2	17.880
	CNS0095596	Whole white alabastrum(diploid) 3	21.378
	CNS0095597	Whole white alabastrum(diploid) 4	21.133
	CNS0095598	Silvery flower (diploied) 1	9.056
	CNS0095599	Silvery flower (diploied) 2	10.599
	CNS0095600	Silvery flower (diploied) 3	22.813
	CNS0095601	Golden flower (diploid) 1	6.994
	CNS0095602	Golden flower (diploid) 2	13.976
	CNS0095603	Golden flower (diploid) 3	14.010
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.115
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.291
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.706
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.703
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.145
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.554
	CNS0095610	Silvery flower (tetraploid) 1	22.534
	CNS0095611	Silvery flower (tetraploid) 2	23.614
	CNS0095612	Silvery flower (tetraploid) 3	26.008
	CNS0095613	Golden flower (tetraploid) 1	16.660
	CNS0095614	Golden flower (tetraploid) 2	22.253
	CNS0095615	Golden flower (tetraploid) 3	16.283
CRA001975	CRR073297	Stem 1	29.565
	CRR073298	Stem 2	25.713
	CRR073299	Stem 3	24.203
	CRR073300	Leaf 1	33.610
	CRR073301	Leaf 2	30.725
	CRR073302	Leaf 3	38.528
	CRR073303	Juvenile bud 1	39.725
	CRR073304	Juvenile bud 2	29.996
	CRR073305	Juvenile bud 3	33.133
	CRR073306	Third green 1	17.646
	CRR073307	Third green 2	12.945
	CRR073308	Third green 3	14.873
	CRR073309	Second white 1	22.507
	CRR073310	Second white 2	13.244
	CRR073311	Second white 3	14.478
	CRR073312	Silver flowering 1	11.486
	CRR073313	Silver flowering 2	16.706
	CRR073314	Silver flowering 3	12.144
	CRR073315	Gold flowering 1	5.710
	CRR073316	Gold flowering 2	5.631
	CRR073317	Gold flowering 3	6.618
	CRR073318	Tawny withering 1	23.986
	CRR073319	Tawny withering 2	12.640
	CRR073320	Tawny withering 3	32.870