Gene detail

Detail information of GWHGAAZE032446

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011078819.1	2.2992E-167	PREDICTED: uncharacterized protein LOC105162488 [Sesamum indicum]
Swissprot	tr\|Q8GUK7\|RMA3_ARATH	1E-27	E3 ubiquitin-protein ligase RMA3
trEMBL	tr\|M1ATA2\|M1ATA2_SOLTU	1E-149	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400029693}
TAIR10	AT3G58030.4	4E-74	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	2488555	2489832	-
GWHAAZE00000021	mRNA	2488555	2489832	-
GWHAAZE00000021	exon	2488555	2489832	-
GWHAAZE00000021	CDS	2488555	2489832	-

Transcript Sequence
>GWHTAAZE032484 ATGGATGAGACTCAGGATACAATGAATCTTGATCTGAATTTGGGACCTGTGGTCCATCCTGATGATAATGATGCTGAGAATGAAACTGAGACGATGACGATGAACTTAGAGGAATGGTTAGAGGGTCCAGTCCAAATAATTAGGGAAGCCCTTAGGCACAGAGATGCTGCTAGGCGCAGGTCCGGGCAAAGGTGGCGTTCGGGCTGGGGACAGGGTCCCACCAACCACGAATCTAGGAACATAGCAATCGGGTCCGCAGGCGGTGGACTAGAAATGGGCGAGGGAAGTGTTGCAGCCGAGAGAAGGCCTAATGATATGACCAAGACTTGCGAAAACAGTAATGGGTTTTTGAACAGTGCATTGGGAGAGAAGAAAGACGTTGAAAATGGCATTGGTGATGATGGGAGTGTTTTCGATTGCAATATATGCTTGGACTTGGCTAGGGATCCCGTTGTCACTTGTTGCGGTCACTTGTTCTGTTGGCCTTGCCTTTACCGGTGGTTACACATTCACTCTGAAGCCAAAGAATGCCCGATCTGCAAGGGAGAAGTGACGATTAAAAGTGTTACCCCAATTTACGGCCGTGGAAATACTACTCCTAATTCAGATGATCCAAGTTTGAAGATCCCAGTTAGGCCCCAAGCGCATCGAATCGAAAGCTGGAGGCAAACAATTCAGAGGAATGCGTTTACTATCCCAATGGAGGAAATGATCCGGCGCCTCGGCAGTAGATTCGATTTAACCCGCGACTTGGTACAGGTCAACCCACCTGAAGGGTCGCGTGAGCTTCCTGAGAGAAGTAACTTGTTGCTCAATCGGATCTTGACTTCTCGGGGAATGCGTAGAGAACAGAACACTGCTGCACCACCCGATGATGTGGTGGACTTAACCCAGACCAGCCCGACTAACTCCGAAGCGGGTGAAAACCGACGGCCATCAGTACTTCTACACCGTAGATCGCCTTCGCATCGAGTGGCTAATATTTCTCATCTTGCTGCTTGGGCATCTGCGGAAAGGATAGTTGAGTCATACCTTCACATACATAATGTGGATAGGAACCAAGAGCAGATTCCACCAGTTGATGATAGAGATTCTGTATCGAGCATCGCTGCGGTTATACAATCAGAGAGCCAAACGGTTGATACTGCCATTGAAATAGATTCGAATATCTCACATTCTACTTCGTCTTCAAGAAGAAGATACGATGCTTCTAGGGTTTCAGATGTGGACAGTGGAGATTCTCGAGCCCTCAGGAGGAGGAGATTGAACCCAAATTAG

Network for GWHGAAZE032446

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.7	zf-C3HC4_3	139	184	1.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K10666	RNF5	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.092
	SRR3591706	second leaf	23.049
	SRR3591707	mature leaf	32.378
	SRR3591708	Shoot apex	32.616
	SRR3591709	Stem	29.905
	SRR3591710	White floral bud	35.367
	SRR3591711	White flower	38.304
	SRR3591712	Green floral bud	30.961
	SRR3591713	Yellow flower	33.399
SRP173429	SRR8316895	Juvenile bud stage	17.925
	SRR8316896	Juvenile bud stage	25.574
	SRR8316897	Juvenile bud stage	9.612
	SRR8316894	Third green stage	10.285
	SRR8316900	Third green stage	24.445
	SRR8316901	Third green stage	25.285
	SRR8316898	Complete white stage	15.280
	SRR8316899	Complete white stage	46.655
	SRR8316903	Complete white stage	26.463
	SRR8316902	Silver flowering stage	13.730
	SRR8316904	Silver flowering stage	15.193
	SRR8316905	Silver flowering stage	7.061
	SRR8316906	Gold flowering stage	31.990
	SRR8316907	Gold flowering stage	31.214
	SRR8316908	Gold flowering stage	33.408
SRP132670	SRR6706286	Control	35.874
	SRR6706287	Light intensity 50%	36.048
	SRR6706288	Light intensity 20%	34.540
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.755
	CNS0095593	Slightly white alabastrum(diploid) 2	15.061
	CNS0095594	Slightly white alabastrum(diploid) 3	18.438
	CNS0095595	Whole white alabastrum(diploid) 2	15.952
	CNS0095596	Whole white alabastrum(diploid) 3	14.007
	CNS0095597	Whole white alabastrum(diploid) 4	12.991
	CNS0095598	Silvery flower (diploied) 1	25.145
	CNS0095599	Silvery flower (diploied) 2	18.773
	CNS0095600	Silvery flower (diploied) 3	30.303
	CNS0095601	Golden flower (diploid) 1	25.670
	CNS0095602	Golden flower (diploid) 2	31.579
	CNS0095603	Golden flower (diploid) 3	32.238
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.915
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.125
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.651
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.764
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.926
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.156
	CNS0095610	Silvery flower (tetraploid) 1	29.867
	CNS0095611	Silvery flower (tetraploid) 2	27.547
	CNS0095612	Silvery flower (tetraploid) 3	29.175
	CNS0095613	Golden flower (tetraploid) 1	18.211
	CNS0095614	Golden flower (tetraploid) 2	23.747
	CNS0095615	Golden flower (tetraploid) 3	35.469
CRA001975	CRR073297	Stem 1	40.870
	CRR073298	Stem 2	39.962
	CRR073299	Stem 3	41.733
	CRR073300	Leaf 1	39.230
	CRR073301	Leaf 2	34.416
	CRR073302	Leaf 3	32.092
	CRR073303	Juvenile bud 1	27.111
	CRR073304	Juvenile bud 2	27.421
	CRR073305	Juvenile bud 3	39.822
	CRR073306	Third green 1	20.097
	CRR073307	Third green 2	13.607
	CRR073308	Third green 3	17.423
	CRR073309	Second white 1	23.035
	CRR073310	Second white 2	21.742
	CRR073311	Second white 3	20.609
	CRR073312	Silver flowering 1	19.703
	CRR073313	Silver flowering 2	20.308
	CRR073314	Silver flowering 3	17.258
	CRR073315	Gold flowering 1	28.712
	CRR073316	Gold flowering 2	27.939
	CRR073317	Gold flowering 3	29.901
	CRR073318	Tawny withering 1	26.999
	CRR073319	Tawny withering 2	28.369
	CRR073320	Tawny withering 3	25.170