Gene detail

Detail information of GWHGAAZE032445

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10158.1	2.023E-109	unnamed protein product [Coffea canephora]
Swissprot	tr\|P46665\|HAT14_ARATH	3E-86	Homeobox-leucine zipper protein HAT14
trEMBL	tr\|A0A068URD4\|A0A068URD4_COFCA	8E-110	Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313\|EMBL:CDP10158.1}
TAIR10	AT5G06710.1	4E-63	homeobox from Arabidopsis thaliana

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	2443128	2445563	-
GWHAAZE00000021	mRNA	2443128	2445563	-
GWHAAZE00000021	exon	2443128	2443458	-
GWHAAZE00000021	exon	2443792	2443871	-
GWHAAZE00000021	exon	2444175	2444488	-
GWHAAZE00000021	exon	2445437	2445563	-
GWHAAZE00000021	CDS	2445437	2445563	-
GWHAAZE00000021	CDS	2444175	2444488	-
GWHAAZE00000021	CDS	2443792	2443871	-
GWHAAZE00000021	CDS	2443128	2443458	-

Transcript Sequence
>GWHTAAZE032483 ATGGAATTAGCTTTGAGCTTAGGAGAAACCCAGAAACCATTCTCTTTTCTACACAAATCCCACATGAATATGAATATGATGTTGAAGAAAACAGATCTAGGGTTTTGCATGGGGTCTCAGATTACTATAATATCTGAACCGGGAAAAGGAACAAGCCTGAATGGGAAGCTTTTACCCTCGGAAGAGACTGAGGAGCTGTCATCGCCGAACAGTGGAGCGTCTTCGTTTCAAATGGACTACTCATTATACAGAAGTGGAAGAAGCAATAACAAGAGGGACCTCGAGGGAATCACTAATGAAGTGGAGATAGAGAGGGGAGGTTCTTCAAGAGGAAGTGATGATGAAGATAGTAATGGTTTGACAAGAAAAAAACTAAGGCTCACTAAAGATCAATCAGCTTTTCTTGAAGAAAGCTTCAAAGAACACAACACCCTTAATCCTAAGCAAAAGCAAGCACTGGCTAAGCAGTTAAACCTTCGCCCTCGCCAAGTAGAAGTGTGGTTTCAGAACAGAAGAGCAAGGACAAAGTTGAAACAGACGGAGGTAGATTGCGAGTATTTAAAGAGGTGCTGTGAAACACTGACAGAAGAGAACAAGAGGTTACAAAAGGAGCTTCAAGAATTAAGAGCCTTGAAGTCTTCTCAACCTTTCTACATGCACCTCCCTGCCACCACCCTCACCATGTGCCCCTCCTGCGAGCGCGTCGCCACCACCACCACTGCCCCTACCACCACCACCACTGTCACTGCTGCCACCGCAACCACCACCACTAATACAACTATGTCACTTGCTACACCTAAATTGCACCCGTTTTTACGCGCCCAAGTTAATGCGCAAGAAGCTTCTACATGA

Network for GWHGAAZE032445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	122	176	2.00E-16
PF02183.19	HALZ	178	212	3.60E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.551
	SRR3591706	second leaf	2.213
	SRR3591707	mature leaf	2.850
	SRR3591708	Shoot apex	7.175
	SRR3591709	Stem	20.635
	SRR3591710	White floral bud	10.924
	SRR3591711	White flower	8.426
	SRR3591712	Green floral bud	9.895
	SRR3591713	Yellow flower	5.677
SRP173429	SRR8316895	Juvenile bud stage	5.628
	SRR8316896	Juvenile bud stage	8.822
	SRR8316897	Juvenile bud stage	2.993
	SRR8316894	Third green stage	3.849
	SRR8316900	Third green stage	11.297
	SRR8316901	Third green stage	11.954
	SRR8316898	Complete white stage	2.658
	SRR8316899	Complete white stage	17.255
	SRR8316903	Complete white stage	6.844
	SRR8316902	Silver flowering stage	1.449
	SRR8316904	Silver flowering stage	2.389
	SRR8316905	Silver flowering stage	1.522
	SRR8316906	Gold flowering stage	5.921
	SRR8316907	Gold flowering stage	5.372
	SRR8316908	Gold flowering stage	8.235
SRP132670	SRR6706286	Control	10.222
	SRR6706287	Light intensity 50%	9.077
	SRR6706288	Light intensity 20%	10.485
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.955
	CNS0095593	Slightly white alabastrum(diploid) 2	5.021
	CNS0095594	Slightly white alabastrum(diploid) 3	4.717
	CNS0095595	Whole white alabastrum(diploid) 2	6.070
	CNS0095596	Whole white alabastrum(diploid) 3	5.066
	CNS0095597	Whole white alabastrum(diploid) 4	4.959
	CNS0095598	Silvery flower (diploied) 1	11.059
	CNS0095599	Silvery flower (diploied) 2	9.134
	CNS0095600	Silvery flower (diploied) 3	4.634
	CNS0095601	Golden flower (diploid) 1	6.417
	CNS0095602	Golden flower (diploid) 2	3.674
	CNS0095603	Golden flower (diploid) 3	3.675
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.536
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.582
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.144
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.143
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.809
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.702
	CNS0095610	Silvery flower (tetraploid) 1	5.213
	CNS0095611	Silvery flower (tetraploid) 2	7.138
	CNS0095612	Silvery flower (tetraploid) 3	5.193
	CNS0095613	Golden flower (tetraploid) 1	3.181
	CNS0095614	Golden flower (tetraploid) 2	3.740
	CNS0095615	Golden flower (tetraploid) 3	0.971
CRA001975	CRR073297	Stem 1	16.667
	CRR073298	Stem 2	14.288
	CRR073299	Stem 3	15.975
	CRR073300	Leaf 1	16.469
	CRR073301	Leaf 2	15.707
	CRR073302	Leaf 3	12.456
	CRR073303	Juvenile bud 1	17.850
	CRR073304	Juvenile bud 2	11.430
	CRR073305	Juvenile bud 3	9.168
	CRR073306	Third green 1	4.480
	CRR073307	Third green 2	3.180
	CRR073308	Third green 3	6.214
	CRR073309	Second white 1	1.558
	CRR073310	Second white 2	4.879
	CRR073311	Second white 3	1.841
	CRR073312	Silver flowering 1	3.455
	CRR073313	Silver flowering 2	3.144
	CRR073314	Silver flowering 3	1.597
	CRR073315	Gold flowering 1	1.626
	CRR073316	Gold flowering 2	2.744
	CRR073317	Gold flowering 3	1.554
	CRR073318	Tawny withering 1	16.220
	CRR073319	Tawny withering 2	13.116
	CRR073320	Tawny withering 3	17.766