Detail information of GWHGAAZE032442


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004150137.12.53197E-94PREDICTED: ubiquitin fusion degradation protein 1 homolog [Cucumis sativus]
trEMBLtr|A0A0A0LIX2|A0A0A0LIX2_CUCSA9E-95Uncharacterized protein {ECO:0000313|EMBL:KGN61855.1}
TAIR10AT2G29070.27E-74Ubiquitin fusion degradation UFD1 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000021gene23880192388975-
GWHAAZE00000021mRNA23880192388975-
GWHAAZE00000021exon23880192388975-
GWHAAZE00000021CDS23880192388975-
Transcript Sequence

Network for GWHGAAZE032442

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03152.15UFD1261992.40E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14016UFD1 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.822
SRR3591706second leaf1.100
SRR3591707mature leaf1.159
SRR3591708Shoot apex2.212
SRR3591709Stem2.111
SRR3591710White floral bud1.815
SRR3591711White flower2.524
SRR3591712Green floral bud1.371
SRR3591713Yellow flower2.148
SRP173429 SRR8316895Juvenile bud stage 0.273
SRR8316896Juvenile bud stage 0.138
SRR8316897Juvenile bud stage 0.112
SRR8316894Third green stage 0.132
SRR8316900Third green stage 0.055
SRR8316901Third green stage 0.283
SRR8316898Complete white stage 0.054
SRR8316899Complete white stage 0.063
SRR8316903Complete white stage 0.099
SRR8316902Silver flowering stage0.250
SRR8316904Silver flowering stage0.320
SRR8316905Silver flowering stage0.320
SRR8316906Gold flowering stage 0.602
SRR8316907Gold flowering stage 1.500
SRR8316908Gold flowering stage 0.874
SRP132670SRR6706286Control0.180
SRR6706287Light intensity 50%0.169
SRR6706288Light intensity 20%0.077
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.089
CNS0095593Slightly white alabastrum(diploid) 20.517
CNS0095594Slightly white alabastrum(diploid) 30.090
CNS0095595Whole white alabastrum(diploid) 20.163
CNS0095596Whole white alabastrum(diploid) 30.229
CNS0095597Whole white alabastrum(diploid) 40.150
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.460
CNS0095600Silvery flower (diploied) 30.370
CNS0095601Golden flower (diploid) 10.118
CNS0095602Golden flower (diploid) 21.068
CNS0095603Golden flower (diploid) 30.847
CNS0095604Slightly white alabastrum(tetraploid) 10.004
CNS0095605Slightly white alabastrum(tetraploid) 20.083
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.182
CNS0095608Whole white alabastrum(tetraploid) 20.053
CNS0095609Whole white alabastrum(tetraploid) 30.084
CNS0095610Silvery flower (tetraploid) 11.539
CNS0095611Silvery flower (tetraploid) 20.306
CNS0095612Silvery flower (tetraploid) 30.420
CNS0095613Golden flower (tetraploid) 10.880
CNS0095614Golden flower (tetraploid) 21.268
CNS0095615Golden flower (tetraploid) 31.275
CRA001975CRR073297Stem 10.087
CRR073298Stem 20.282
CRR073299Stem 30.000
CRR073300Leaf 10.000
CRR073301Leaf 20.320
CRR073302Leaf 30.262
CRR073303Juvenile bud 10.281
CRR073304Juvenile bud 20.468
CRR073305Juvenile bud 30.207
CRR073306Third green 10.084
CRR073307Third green 20.156
CRR073308Third green 30.211
CRR073309Second white 10.410
CRR073310Second white 20.571
CRR073311Second white 30.056
CRR073312Silver flowering 10.454
CRR073313Silver flowering 20.363
CRR073314Silver flowering 30.646
CRR073315Gold flowering 10.018
CRR073316Gold flowering 20.219
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000