Gene detail

Detail information of GWHGAAZE032437

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002531170.1	0	carbon catabolite repressor protein, putative [Ricinus communis]
COG	YP_005369360.1	2E-12	hypothetical protein COCOR_03385
Swissprot	tr\|Q8W0Z9\|CCR4A_ARATH	0	Carbon catabolite repressor protein 4 homolog 1
trEMBL	tr\|B9SYV1\|B9SYV1_RICCO	0	Carbon catabolite repressor protein, putative {ECO:0000313\|EMBL:EEF31213.1}
TAIR10	AT3G58560.1	0	DNAse I-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	2346021	2353267	+
GWHAAZE00000021	mRNA	2346021	2353267	+
GWHAAZE00000021	exon	2346021	2346178	+
GWHAAZE00000021	exon	2348031	2348754	+
GWHAAZE00000021	exon	2349504	2349590	+
GWHAAZE00000021	exon	2349676	2349759	+
GWHAAZE00000021	exon	2349833	2349919	+
GWHAAZE00000021	exon	2350007	2350093	+
GWHAAZE00000021	exon	2350476	2350529	+
GWHAAZE00000021	exon	2350633	2350724	+
GWHAAZE00000021	exon	2350874	2350988	+
GWHAAZE00000021	exon	2352562	2352709	+
GWHAAZE00000021	exon	2353122	2353267	+
GWHAAZE00000021	CDS	2346021	2346178	+
GWHAAZE00000021	CDS	2348031	2348754	+
GWHAAZE00000021	CDS	2349504	2349590	+
GWHAAZE00000021	CDS	2349676	2349759	+
GWHAAZE00000021	CDS	2349833	2349919	+
GWHAAZE00000021	CDS	2350007	2350093	+
GWHAAZE00000021	CDS	2350476	2350529	+
GWHAAZE00000021	CDS	2350633	2350724	+
GWHAAZE00000021	CDS	2350874	2350988	+
GWHAAZE00000021	CDS	2352562	2352709	+
GWHAAZE00000021	CDS	2353122	2353267	+

Transcript Sequence
>GWHTAAZE032475 ATGCTGAGCGTGCTGAGAGTTCACCTTCCGTCCGACATTCCTATTGTAGGCTGCGAACTTACGCCGTATGTGTTATTAAGACGGCCGGACACGTCTGTAACAACCGACGATGTACCGGAATCTGCGCCATTCGAGGGGCACTTTTTGAGATACAAGTGGTACCGCATACAAAGTGACAAAAAAGTAGCCATCTGTAGTGTACATCCATCAGAGCAAGCCACACTGCAGTGCCTAGGATGTGTAAAGGCCAAAATACCAGTTGCCAAAAGTTACCATTGCTCTCCCAAATGTTTTTCTGACGCATGGCAACACCACCGAGTCCTGCACGAGCGTGCTGCTAGTGCCGTAAATGAAAACGGCAACGAGGACGAAGAATTGTTTGGACGGTTTAATAACACAGGATCTGGAGGGGTCAATACCAGCATAGGTAATGGTGCAGCACCCTTGTACCCTGCTGCAGTAGCACAAAGGAATGGTGGTGAAACATGGTTTGAAGTTGGACGGTCCAAAACGTACACACCCACAGCCGATGATATTGGCCACGTCCTTAAGTTTGAGTGCGTAGTGGTAGATGCAGAAACCAAATTACCTGTTGGACATGTCAACACTATATTAACATCACGTGTTATTCCTGCTCCATCTCCTAGTCCACGTCGGCTGATTTCAGTCGGTGGAGTTGATGTGGCGAACTTGGATTATGATGGTCGTATTTCGTCTGCTGGAGCTTTCACTGTGCTCTCGTACAACATTTTATCTGATGCGTATGCTACAAATGAAGTGTACAGTTATTGTCCTTCTTGGGCTCTTTCTTGGCCTTACCGCAGACAGAATTTGTTACGAGAAATAGTGGGATACCGGGCAGATGTTGTTTGCCTCCAAGAGGTTCAGAGCGATCATTTCGACGAATTTTTTGCCCCTGAGCTGGACAAACATGGCTATCAGGCTCTTTTCAAAAGAAAAACCGCAGAGGTTTTCAGTGGTAATAGTCATACCATTGATGGTTGTGCTACATTTTTCCGCAGAGATAGGTTTTCGCATGTCAAAAAATATGAGGTTGAGTTTAATAAAGCTGCACAATCTTTAACCGATGCTTTGGTTCCAAGTGCTCAGAAGAAAACTGCTCTTAATCGATTGGTTAAGGATAACGTTGCACTTATCGTGGTTCTAGAAGCTAAGTTCAGTAACCTGGGGGTCGATAATCCCGGGAAACGCCAGCTAGTTTGTGTGGCAAATACACATGTAAATGTCCACCATGATTTGAAGGATGTCAAGCTTTGGCAGGTTCACACATTATTGAAAGGATTGGAAAAAATAGCTGCTAGTGCAGATATCCCAATGTTGGTGTGTGGGGATTTTAATTCAGTTCCTGGGAGTGCTCCTCACGCACTTCTTGCAATGGGGAAGGTTGACCCAATGCATCCAGAATTAGCAATTGATCCCCTCGGAATTTTGCGCCCCGCCACCAAACTAACACACCAGTTGCCATTGGTTAGTGCTTACTCGTCGTTTGCAAGAATTGGAGCTGGTCTTGGGTTTGAACAACAGAGAAGAAGAATGGATCCAACTACAAATGAACCCTTGTTTACAAATTGCACTAGAGATTTTATTGGTACCCTTGATTACATATTTTACTCAGCTGACTCCTTATCCGTGGAATCTTTGTTGGAGCTTTTGGATGAGGATAGCTTGAGGAAAGATACAGCACTTCCTTCACCCGAGTGGTCCTCCGATCACATAGCCCTCTTGGCCGAATTCCGATGCAAACCTCGAATTAGACGCTAA

Network for GWHGAAZE032437

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03372.24	Exo_endo_phos	246	578	3.40E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12603	CNOT6, CCR4	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.756
	SRR3591706	second leaf	31.637
	SRR3591707	mature leaf	37.657
	SRR3591708	Shoot apex	43.953
	SRR3591709	Stem	48.453
	SRR3591710	White floral bud	60.398
	SRR3591711	White flower	81.162
	SRR3591712	Green floral bud	58.102
	SRR3591713	Yellow flower	75.210
SRP173429	SRR8316895	Juvenile bud stage	32.868
	SRR8316896	Juvenile bud stage	43.207
	SRR8316897	Juvenile bud stage	18.322
	SRR8316894	Third green stage	20.153
	SRR8316900	Third green stage	59.773
	SRR8316901	Third green stage	51.654
	SRR8316898	Complete white stage	27.943
	SRR8316899	Complete white stage	85.138
	SRR8316903	Complete white stage	45.099
	SRR8316902	Silver flowering stage	30.640
	SRR8316904	Silver flowering stage	43.372
	SRR8316905	Silver flowering stage	17.521
	SRR8316906	Gold flowering stage	68.363
	SRR8316907	Gold flowering stage	66.459
	SRR8316908	Gold flowering stage	65.407
SRP132670	SRR6706286	Control	58.080
	SRR6706287	Light intensity 50%	54.654
	SRR6706288	Light intensity 20%	62.291
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.476
	CNS0095593	Slightly white alabastrum(diploid) 2	31.010
	CNS0095594	Slightly white alabastrum(diploid) 3	27.538
	CNS0095595	Whole white alabastrum(diploid) 2	30.254
	CNS0095596	Whole white alabastrum(diploid) 3	23.091
	CNS0095597	Whole white alabastrum(diploid) 4	26.603
	CNS0095598	Silvery flower (diploied) 1	41.022
	CNS0095599	Silvery flower (diploied) 2	35.862
	CNS0095600	Silvery flower (diploied) 3	76.295
	CNS0095601	Golden flower (diploid) 1	32.510
	CNS0095602	Golden flower (diploid) 2	72.740
	CNS0095603	Golden flower (diploid) 3	72.510
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.726
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.632
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.155
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.970
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.131
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.751
	CNS0095610	Silvery flower (tetraploid) 1	73.290
	CNS0095611	Silvery flower (tetraploid) 2	68.905
	CNS0095612	Silvery flower (tetraploid) 3	60.252
	CNS0095613	Golden flower (tetraploid) 1	38.391
	CNS0095614	Golden flower (tetraploid) 2	65.968
	CNS0095615	Golden flower (tetraploid) 3	75.462
CRA001975	CRR073297	Stem 1	58.120
	CRR073298	Stem 2	51.974
	CRR073299	Stem 3	59.052
	CRR073300	Leaf 1	60.129
	CRR073301	Leaf 2	55.603
	CRR073302	Leaf 3	50.667
	CRR073303	Juvenile bud 1	58.767
	CRR073304	Juvenile bud 2	55.321
	CRR073305	Juvenile bud 3	75.823
	CRR073306	Third green 1	38.176
	CRR073307	Third green 2	30.310
	CRR073308	Third green 3	36.168
	CRR073309	Second white 1	44.528
	CRR073310	Second white 2	45.695
	CRR073311	Second white 3	47.243
	CRR073312	Silver flowering 1	51.267
	CRR073313	Silver flowering 2	54.258
	CRR073314	Silver flowering 3	46.781
	CRR073315	Gold flowering 1	26.763
	CRR073316	Gold flowering 2	45.152
	CRR073317	Gold flowering 3	37.499
	CRR073318	Tawny withering 1	58.673
	CRR073319	Tawny withering 2	50.153
	CRR073320	Tawny withering 3	57.049