Gene detail

Detail information of GWHGAAZE032414

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007226886.1	0	hypothetical protein PRUPE_ppa016615mg [Prunus persica]
Swissprot	tr\|Q9SS86\|LHTL4_ARATH	0.0000002	Lysine histidine transporter-like 4
trEMBL	tr\|M5Y7X2\|M5Y7X2_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ28085.1}
TAIR10	AT5G16740.1	3E-100	Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	1901082	1903470	-
GWHAAZE00000021	mRNA	1901082	1903470	-
GWHAAZE00000021	exon	1903218	1903470	-
GWHAAZE00000021	exon	1902386	1902879	-
GWHAAZE00000021	exon	1901082	1901621	-
GWHAAZE00000021	CDS	1903218	1903470	-
GWHAAZE00000021	CDS	1902386	1902879	-
GWHAAZE00000021	CDS	1901082	1901621	-

Transcript Sequence
>GWHTAAZE032452 ATGTGGAAGTCTTTGGGAGTGTCTTACTCTGACTGTTTGCCTTCTCGTACTAAAGTGGTGGCAAATGATGAGTCACTCCACGATAATAATAATATTAACAAAGCATGTGATGCTTGTGTGAAGGAAAGCAAGGTTTGCAATTGCAACGACGTCGTTCTCCAGAAGAAATATGGTGGGGAACAGCACCACAAAGGTGGTGCTAGTAATAGTTCTTTCCTTCATTCTGTCATCAACATGGTTGGAATGCTCATAGGTTTAGGCCAACTCTCAACACCATATGCTCTACAAAGAGGAGGCTGGTCATCAGCATTTCTCCTAGTAGGCATCGGCGCCATATGCGCTTACAGCTCTCACCTCCTCGGAAAATGCCTCGACAGGAACCCTAAATCCAAGAACTACAACGACATTGGGCACAACGCGTTTGGATCAAGAGGAAGAATCTTAGCCGCGAGCTTCATCTACATGGAGATTTTCATGGCCCTTGTTTCCTACACCATCTCTCTCCATGACAACTTGAACACCGTGTTTCTGGGGACGCATTTTAACTATTTAAAATGGACCGAGCTATCAACGTCTCACATCTTAACAGTGATAGCAGTGCTAGTCGCACTTCCGAGCTTGTGGTTGAGAGATCTTTCTTCCATCTCTTTTCTTTCTTCGGGCGGTATTCTCATGTCACTACTTATTTTTGGAACTGTGGCTTGGACCGCCATTTTCGGAGGGGTGAAAGCTAATAAGCGGATACCAGTATCAATTGTTAGCTTTTCAGTAGTCACGGCCCTCTACACTTCCTTGGCATTCATGGGAGCCAAGCTCTTTGGACCTCAAGTGAACCCCCAAATCACCCTCAGCATGCCTAGAAACCTCATTGTCACAAAGATTGCACTATGGGCAACTGTTCTAACACCAATGACCAAATATGCCCTTGAGTTTGCACCATTCGCAATGCAACTCGAGCACAACCTTCCCCGTTCAATGAATCCAAGAACGAAGATGATCGTTCGAGGCACCACTGGCTCGATCCTGCTACTGGTAATACTAACCTTGGCACTTTCGGTGCCTTATTTTGAGTACGTTCTTAGCCTTACTGGCTCCCTCGTCAGTGTTGTGATTTGCATCACTTTACCTTGCACCTTCTACACCAAGATTTATTGGGCTCAAATATCAAAACCATTCTTGACTCTCAATGTGATCCTTGTCGCATTCGGCTTTCTTCTTGGGTTGTCTGGAACTATCTCTTCTTTGAAGTTGCTTGTAAGAAACTTAGGAAGAGCCCACTCACACTAA

Network for GWHGAAZE032414

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.19	Aa_trans	69	237	3.50E-25
PF01490.19	Aa_trans	245	412	6.40E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15015	SLC32A, VGAT	GABAergic synapse	map04727
		Retrograde endocannabinoid signaling	map04723
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.514
	SRR3591707	mature leaf	3.072
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.440
	SRR3591710	White floral bud	0.447
	SRR3591711	White flower	1.778
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.051
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.068
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.348
	SRR8316901	Third green stage	0.378
	SRR8316898	Complete white stage	0.442
	SRR8316899	Complete white stage	0.701
	SRR8316903	Complete white stage	0.514
	SRR8316902	Silver flowering stage	0.141
	SRR8316904	Silver flowering stage	0.174
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.027
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.321
	SRR6706287	Light intensity 50%	0.386
	SRR6706288	Light intensity 20%	0.379
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.039
	CNS0095594	Slightly white alabastrum(diploid) 3	0.100
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.341
	CNS0095599	Silvery flower (diploied) 2	0.319
	CNS0095600	Silvery flower (diploied) 3	0.169
	CNS0095601	Golden flower (diploid) 1	0.329
	CNS0095602	Golden flower (diploid) 2	0.181
	CNS0095603	Golden flower (diploid) 3	0.154
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.106
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.048
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.017
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.040
	CNS0095610	Silvery flower (tetraploid) 1	0.153
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.172
	CNS0095613	Golden flower (tetraploid) 1	0.381
	CNS0095614	Golden flower (tetraploid) 2	0.158
	CNS0095615	Golden flower (tetraploid) 3	0.054
CRA001975	CRR073297	Stem 1	0.045
	CRR073298	Stem 2	0.054
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.211
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.310
	CRR073304	Juvenile bud 2	0.072
	CRR073305	Juvenile bud 3	0.423
	CRR073306	Third green 1	0.118
	CRR073307	Third green 2	0.093
	CRR073308	Third green 3	0.052
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	6.319
	CRR073316	Gold flowering 2	4.056
	CRR073317	Gold flowering 3	8.884
	CRR073318	Tawny withering 1	15.859
	CRR073319	Tawny withering 2	31.403
	CRR073320	Tawny withering 3	15.588