Gene detail

Detail information of GWHGAAZE032296

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02303.1	1.31844E-32	unnamed protein product [Coffea canephora]
COG	YP_007116625.1	1E-20	ATP-dependent chaperone ClpB
Swissprot	tr\|Q75GT3\|CLPB2_ORYSJ	2E-31	Chaperone protein ClpB2, chloroplastic (Precursor)
trEMBL	tr\|A0A068U3W2\|A0A068U3W2_COFCA	5E-33	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02303.1}
TAIR10	AT5G15450.1	3E-27	casein lytic proteinase B3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000016	gene	304013	307216	-
GWHAAZE00000016	mRNA	304013	307216	-
GWHAAZE00000016	exon	304013	305646	-
GWHAAZE00000016	exon	306360	306613	-
GWHAAZE00000016	exon	306707	306853	-
GWHAAZE00000016	exon	306944	307053	-
GWHAAZE00000016	exon	307154	307216	-
GWHAAZE00000016	CDS	307154	307216	-
GWHAAZE00000016	CDS	306944	307053	-
GWHAAZE00000016	CDS	306707	306853	-
GWHAAZE00000016	CDS	306360	306613	-
GWHAAZE00000016	CDS	304013	305646	-

Transcript Sequence
>GWHTAAZE032334 ATGCTTATGGACGGGTACATGCAGCCAAAATGCCTCGTGGAGATGGAGAAAACTATTAAAGATAGATTTGGTGTTCGAATTACCTATGATGCTGCTAGTGGGTTACATACTAAGCTTGATAAACTCATTCGAGATGGTTGCTGGTGTTTCCCTCCTGCCATCTCCTCTGAACTTGCATCAGCTTATGATATACTGAGAGAGCATAGAGAGGCAGTTAACTGGTGGAGAATTGTGTGGTTCAAAGGTTATACCCCCAAACTAGCTATTTTCACGTGGCTGGGATGCAAGAAAAGGCTCCTTACTAAAGATAGACTGCAACATGAGTGGAAGCTTGTCCGATATAAAAATGGAACCCGAAGAGCTGGGAGCACTTGGGATGAGGAAATACAAATTGCCGTGAAAGAGAATGCCAGTGACAGTTTTGAAGCCAGGATTAAGAACTTGTCGTTGGCTGCTACCGTCTATTACATATGGCAGGAAAGAAACGATCGGATATTCACAAACACAACTCATAATTGGGAGTTTGTGATAACAAGAATCAACAATTGGATCAAGGAAGCGACTTGGTACTGGAATGGGTTTGAGAAGTTGTACAAATTACTCGGGCTTCCATTTGACAGAAATGAATTTCTTAATGCTGATTTTAGTGCTAATAACAACAGCTACAGATATGAGAATTCCGGTAACACTGCCACCAGTTCTAAAAACCCACTTCTCAATACCACCACCACCACCAAATATGAAGGCAAGCAGAATTGGAATTCTTCCTATTCTATTCTTCTAAATATGGAGGGGAGTGATGAGTCAATACAGTATACTCCATTTATTAAGGTAGCAAAGAAAGGTGTGGAGTTAGAAGGCACACCAACTGTTCGATCAATTGCCTCAGAGTGCAAACCTAAGGAAGAAGTCAAACCTGATGAAGTAATAGATGAGGGTTTGGTTTTGATTGATAGTGAGAAGTTTACCAAAGAGGCTTGGGAAGCAATTGCTTATGCACTGAAAATGGCAGCTAGCATGCAACAAAAGGTGGAGACGGAGCATCTAATGAGAGCACTATTGGAACAAAAGCAAGGGCTTGTTAGTCGTGTATTAACTGAAGTAAGCATAGATATCGCTCTTCTCTTGAAAATTACCAATGATTTTATTCAATGTCCACCAAAGAATATTGGTGAAGAAAATGGTTCAGTTATAAGGAGGGAATTGGCAGCATTGTTGCAGCGAGCCATGGAGTGGAAGGAAGAGTATGGGGATTTTTTAGTGTCAACTGAGCATTTATTGTTGGGTTTTAATTTAGATAATAGAATTGGCAAGCAATTGTACAAAGAAGGGAATGCAGTTGACATTTCTTTCAAAATATTAGATGCCATAGAGGCTATGAGGAAGTCCCAGGTGTCCATGAACCAAGAGGAAACTTGTGAAGTATTGAAGAACTACATAGATGCGGAAAATCAAGAATACATTGATGCTTGGGTAATGGAAGTGACTAAATTCCATCGGGTCAGAGTTCTAAATGAAAGTTCTATTAAAAGGGGGAAGTTAAATGAATGCAAAAATGGTTTGGGTGAATTAGCTAATTATGATGCTAAAGTTAGTACATGTAAGGGCCTTGCTACTTACGAAGTTGAGCACCGTGTAATTGATGAGCAATCTACTGAAATGAACTTGATCATATTGATAAGCAATACGCCAACCTTGTTTGATGAAATGCCCAAAAGAGAACATTTGTTAGGCAAGGCCATGATTTTGAAATTTTTTCGAGAGGAGAAGTTAGATTATACATTGGATTTGATAAAGAAAGAAAATATTTGGACTCCACTAGCAATGCTAACTCAAAGTAACGGGTCAAATGTTGTAGAGTTGTTGGATAAAATTCTAAATGCAAGCAGTAGTTTTTCTGCTGCTATTTTTGACTTGGCTGGTGTCTCTCTAAAAGGACTTGATAAAGGTACTTGGGTGCATAGTTTCTTGGAGGAATACAAGTCAGATTGTGATATGGTGATTGGCACAACAATGGAAGCAGTTCTGGTTATCAACACACAAGATAAGTGTATTTTAAGGCAAAGTCCAATGGCTGCATTGTATACTGAAAGATGGAAGGCTCCTTACTACTTAAATCATTCGGAGAGCACAAGCACTAAGCTGAACCAAGAACCTATTTTTGTGTTTGATCCGGGAGGAAGCCAAGCAAGAAAAGTGAACTCTTAA

Network for GWHGAAZE032296

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13966.7	zf-RVT	59	107	5.90E-10
PF02861.21	Clp_N	340	383	5.90E-08
PF02861.21	Clp_N	416	443	0.18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03695	clpB	Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0019538	biological_process	protein metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.103
	SRR3591706	second leaf	0.019
	SRR3591707	mature leaf	0.560
	SRR3591708	Shoot apex	0.061
	SRR3591709	Stem	0.177
	SRR3591710	White floral bud	0.125
	SRR3591711	White flower	0.316
	SRR3591712	Green floral bud	0.100
	SRR3591713	Yellow flower	0.035
SRP173429	SRR8316895	Juvenile bud stage	0.527
	SRR8316896	Juvenile bud stage	1.612
	SRR8316897	Juvenile bud stage	0.205
	SRR8316894	Third green stage	0.658
	SRR8316900	Third green stage	0.668
	SRR8316901	Third green stage	0.867
	SRR8316898	Complete white stage	0.056
	SRR8316899	Complete white stage	0.338
	SRR8316903	Complete white stage	1.274
	SRR8316902	Silver flowering stage	0.624
	SRR8316904	Silver flowering stage	1.288
	SRR8316905	Silver flowering stage	0.327
	SRR8316906	Gold flowering stage	1.291
	SRR8316907	Gold flowering stage	1.390
	SRR8316908	Gold flowering stage	0.500
SRP132670	SRR6706286	Control	0.219
	SRR6706287	Light intensity 50%	0.367
	SRR6706288	Light intensity 20%	0.394
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.583
	CNS0095593	Slightly white alabastrum(diploid) 2	0.187
	CNS0095594	Slightly white alabastrum(diploid) 3	1.019
	CNS0095595	Whole white alabastrum(diploid) 2	0.162
	CNS0095596	Whole white alabastrum(diploid) 3	0.184
	CNS0095597	Whole white alabastrum(diploid) 4	0.079
	CNS0095598	Silvery flower (diploied) 1	0.048
	CNS0095599	Silvery flower (diploied) 2	0.075
	CNS0095600	Silvery flower (diploied) 3	0.893
	CNS0095601	Golden flower (diploid) 1	0.156
	CNS0095602	Golden flower (diploid) 2	1.106
	CNS0095603	Golden flower (diploid) 3	1.098
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.137
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.186
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.171
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.137
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.136
	CNS0095610	Silvery flower (tetraploid) 1	0.070
	CNS0095611	Silvery flower (tetraploid) 2	0.157
	CNS0095612	Silvery flower (tetraploid) 3	0.077
	CNS0095613	Golden flower (tetraploid) 1	0.017
	CNS0095614	Golden flower (tetraploid) 2	0.096
	CNS0095615	Golden flower (tetraploid) 3	0.077
CRA001975	CRR073297	Stem 1	0.306
	CRR073298	Stem 2	0.220
	CRR073299	Stem 3	0.080
	CRR073300	Leaf 1	0.179
	CRR073301	Leaf 2	0.080
	CRR073302	Leaf 3	0.007
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.040
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.101
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.023
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.080
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.066
	CRR073319	Tawny withering 2	0.082
	CRR073320	Tawny withering 3	0.000