Gene detail

Detail information of GWHGAAZE032242

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285750.1	1.7108E-172	PREDICTED: uncharacterized protein LOC100253534 isoform X1 [Vitis vinifera]
COG	YP_434850.1	8E-106	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component subunit beta
Swissprot	tr\|Q9SAV3\|ODBB1_ARATH	2E-153	2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial (Precursor)
trEMBL	tr\|F6GUP1\|F6GUP1_VITVI	6E-173	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43818.1}
TAIR10	AT1G55510.1	2E-127	branched-chain alpha-keto acid decarboxylase E1 beta subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	73529459	73544288	-
GWHAAZE00000009	mRNA	73529459	73544288	-
GWHAAZE00000009	exon	73544238	73544288	-
GWHAAZE00000009	exon	73543958	73544015	-
GWHAAZE00000009	exon	73543757	73543854	-
GWHAAZE00000009	exon	73543123	73543212	-
GWHAAZE00000009	exon	73542956	73543024	-
GWHAAZE00000009	exon	73542787	73542873	-
GWHAAZE00000009	exon	73538120	73538215	-
GWHAAZE00000009	exon	73537956	73538033	-
GWHAAZE00000009	exon	73537232	73537318	-
GWHAAZE00000009	exon	73533031	73533087	-
GWHAAZE00000009	exon	73532819	73532948	-
GWHAAZE00000009	exon	73532520	73532596	-
GWHAAZE00000009	exon	73531702	73532310	-
GWHAAZE00000009	exon	73531228	73531547	-
GWHAAZE00000009	exon	73530932	73531022	-
GWHAAZE00000009	exon	73530629	73530841	-
GWHAAZE00000009	exon	73529459	73529584	-
GWHAAZE00000009	CDS	73544238	73544288	-
GWHAAZE00000009	CDS	73543958	73544015	-
GWHAAZE00000009	CDS	73543757	73543854	-
GWHAAZE00000009	CDS	73543123	73543212	-
GWHAAZE00000009	CDS	73542956	73543024	-
GWHAAZE00000009	CDS	73542787	73542873	-
GWHAAZE00000009	CDS	73538120	73538215	-
GWHAAZE00000009	CDS	73537956	73538033	-
GWHAAZE00000009	CDS	73537232	73537318	-
GWHAAZE00000009	CDS	73533031	73533087	-
GWHAAZE00000009	CDS	73532819	73532948	-
GWHAAZE00000009	CDS	73532520	73532596	-
GWHAAZE00000009	CDS	73531702	73532310	-
GWHAAZE00000009	CDS	73531228	73531547	-
GWHAAZE00000009	CDS	73530932	73531022	-
GWHAAZE00000009	CDS	73530629	73530841	-
GWHAAZE00000009	CDS	73529459	73529584	-

Transcript Sequence
>GWHTAAZE032280 ATGTCTGTACAACAGGGCATTGTTGGATTTGGTATTGGTTTGGCTGCAATGATTGTCAATGAAGCTGCCAAGTTTAGATATCGGAGCGGTAATCAATTCAACTGTGGAGGTTTAACAGTAAGAGCTCCCTATGGAGCTGTGGGCCATGGTGGGCATTATCACTCACAATCCCCTGAAGCTTTCTTCTGTCATGTCCCGGGTATCAAGGTGGTGATCCCTCGAAGTCCAAGGCAAGCTAAAGGATTGTTATTGTCATGCATACGCGATCCCAACCCTGTTGTCTTTTTTGAACCGAAGTGGCTTTACCGTTTGGCTGTAGAAGAGGTTCCAGAGCATGACTACATGTTGCCTCTGTCAGAGGCAGAGGTGATTCGAGAAGGTAGCGATATAACACTTGTTGGGTGGGGGGCTCAGCTATCGATCATGGAACAGGCTTGCATTGAAGCTGAAAAGGATGGAATCTCTTGTGAACTGATAGACCTAAAGACACTAATACCTTGGGACAAGGAAACAGTAGAAAACTCTGTTAATAAGACTAGCAGACTTCTGATTAGTCATGAAGCTCCAATAACAGGCGGATTTGGTGCTGAAATCGCTGCATCTATTGTTGAACGTTGCTTCTTGAGGTTAGAAGCTCCTGTAGCCAGGGTTTGTGGTCTGGACACTCCTTTTCCACTTGTTTTTGAACCCTTCTATATGCCCACCAAAAACAAGAAATTGTCATTGGATTCACAGAATAAGACTTTAGAAATTCCAGAACCCACCAAGAAGCAGCCTTCTGTTGATTCTGGTGATGTCACAAATAATGGTCAGATCCACTCATTTGATAGGTCTGTGACCCCTACGCTTCAGGATTTTTATCATCCTGCTGGTTATGCTTCTACTGCCTACTATTATGGAGGTTATGATGGTAATGCAACTAATGAATGGGACGAGTATGCACGATATGTTAGCCCTGATGGAGTTGAGATGACACCAGGAGTTTATGGGGACAATGGATCACTTATGTATCACCATGGTTATGGTTATGCACCATACAGTCCATATTCACCTGCTGGTTCTCCTGTTCCAACAGTAGGACATGACGGTCAGCTCTATGGAGCTCAGCATTACCAGTATCCTACTCCGTATTTCCAACAGCCTACACCAACCAGTGGGGCATACCCTAATCAGGCTGTCCCACCAAAGGGCGGCGAGATATCCACCACAGCTGGGAGTGGTCAAGTATCATTGTCTGTGGATACCCCCGCCAATGGAAATTCAAATGGCAATATTTTGAGCGGTGGGACTGTAAAGGGAAATTCAAATGTCTCGGCACCCGCGAGGTCAGCGTACCAGAGCTCATCTTTTAATGTGAATAATGGTTCCTACGGAAGGGGCGGTGTCTTGCCTGCTGCTTCTGGTTATCAAGATCCAAGATTTAACTATGACGGGATTCGGTCTCCCATACCATGGATGGATGGTCCATTATATTCTGATGGGTACCCAGTGACTAGCTCTTCTATCACTTCATCTGTATCAAACAATGGGAATAATAATGTTCAGACATCAAGGAATCAGTACCTCCGTCCTCATTCTCAGCTCATGGGTATGCACCAACCAAGGCCAACAACGGGCATGAACACAGCTAACGGATATAATATGAATAGGATGTACCCAAACAAACTATATGGTGGGCAATATGGGAATACTTTCAGATCTGGTCTAGTTTATGGTAATAACGCTTATGATTCACGAACCAATGGACAAGGATGGTTGGCTATGGACAACAAGTACAAGCCGAGGGGACGAGGAGGCAATGGTTTCTTTGGTTATGGCAACGAGAACATAGACGGTTTGAATGAGTTGAACAGGGGACCTAGAGCGAAAAGCAGCTCTAAGAACCAAAAGGGCTTTACACCCATTGCCACCCAAAATGGTAATAAGAAGTTAGATGCAGCGTACCAGGAGGCTCAGCAGAAGGGTGCTGGTGCCTGCCCTGTTTTCCTTTTCTTCTCGGTGAATACTAGTGGGCAGTTTGTTGGCGTTGCAGAGATGGTAGGGCCGGTTGATTTTAACAAGAGTGTGGAATATTGGCAGCAAGACAAGTGGATTGGCTGTTTCCCTGTGAAGTGGCACATTGTAAAGGATGTACCCAACAGTTTGTTGAAGCACATTACCCTTGAAAACAATGAGAACAAACCTGTTACTAATAGCAGGGACACTCAGGAGGTATGGGAAGGTAAGGCCACAACAGATGAAAGGAGCAAAGAAGGCAAATATCGATTTGAACAACATCCAGAAATCTGCTGCTCTAGAGGTGGTGGCTGCCTTGGAGGCTACCCGGTTGTCGAGTAA

Network for GWHGAAZE032242

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02779.25	Transket_pyr	16	103	3.50E-19
PF02780.21	Transketolase_C	120	237	5.60E-33
PF04146.16	YTH	637	740	1.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00167	BCKDHB, bkdA2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.659
	SRR3591706	second leaf	22.569
	SRR3591707	mature leaf	31.535
	SRR3591708	Shoot apex	33.163
	SRR3591709	Stem	30.740
	SRR3591710	White floral bud	33.825
	SRR3591711	White flower	47.890
	SRR3591712	Green floral bud	41.456
	SRR3591713	Yellow flower	46.706
SRP173429	SRR8316895	Juvenile bud stage	30.119
	SRR8316896	Juvenile bud stage	40.444
	SRR8316897	Juvenile bud stage	19.514
	SRR8316894	Third green stage	21.036
	SRR8316900	Third green stage	58.800
	SRR8316901	Third green stage	59.728
	SRR8316898	Complete white stage	15.998
	SRR8316899	Complete white stage	72.795
	SRR8316903	Complete white stage	31.809
	SRR8316902	Silver flowering stage	26.358
	SRR8316904	Silver flowering stage	35.477
	SRR8316905	Silver flowering stage	17.526
	SRR8316906	Gold flowering stage	55.603
	SRR8316907	Gold flowering stage	53.937
	SRR8316908	Gold flowering stage	60.207
SRP132670	SRR6706286	Control	91.902
	SRR6706287	Light intensity 50%	89.241
	SRR6706288	Light intensity 20%	91.947
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.823
	CNS0095593	Slightly white alabastrum(diploid) 2	31.111
	CNS0095594	Slightly white alabastrum(diploid) 3	26.616
	CNS0095595	Whole white alabastrum(diploid) 2	29.350
	CNS0095596	Whole white alabastrum(diploid) 3	26.748
	CNS0095597	Whole white alabastrum(diploid) 4	24.242
	CNS0095598	Silvery flower (diploied) 1	42.472
	CNS0095599	Silvery flower (diploied) 2	33.888
	CNS0095600	Silvery flower (diploied) 3	78.506
	CNS0095601	Golden flower (diploid) 1	31.932
	CNS0095602	Golden flower (diploid) 2	70.149
	CNS0095603	Golden flower (diploid) 3	71.197
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.646
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.236
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.257
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.300
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.989
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.270
	CNS0095610	Silvery flower (tetraploid) 1	36.268
	CNS0095611	Silvery flower (tetraploid) 2	33.276
	CNS0095612	Silvery flower (tetraploid) 3	17.403
	CNS0095613	Golden flower (tetraploid) 1	23.064
	CNS0095614	Golden flower (tetraploid) 2	33.572
	CNS0095615	Golden flower (tetraploid) 3	29.687
CRA001975	CRR073297	Stem 1	64.301
	CRR073298	Stem 2	60.486
	CRR073299	Stem 3	56.803
	CRR073300	Leaf 1	78.548
	CRR073301	Leaf 2	70.705
	CRR073302	Leaf 3	59.819
	CRR073303	Juvenile bud 1	70.649
	CRR073304	Juvenile bud 2	54.286
	CRR073305	Juvenile bud 3	95.882
	CRR073306	Third green 1	23.081
	CRR073307	Third green 2	19.271
	CRR073308	Third green 3	26.213
	CRR073309	Second white 1	30.351
	CRR073310	Second white 2	28.664
	CRR073311	Second white 3	26.306
	CRR073312	Silver flowering 1	17.318
	CRR073313	Silver flowering 2	22.822
	CRR073314	Silver flowering 3	17.564
	CRR073315	Gold flowering 1	30.133
	CRR073316	Gold flowering 2	42.520
	CRR073317	Gold flowering 3	46.464
	CRR073318	Tawny withering 1	41.265
	CRR073319	Tawny withering 2	32.576
	CRR073320	Tawny withering 3	39.770