Gene detail

Detail information of GWHGAAZE032224

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006453455.1	hypothetical protein CICLE_v10008147mg [Citrus clementina]
Swissprot	tr\|F4JQ95\|DGK7_ARATH	Diacylglycerol kinase 7
trEMBL	tr\|V4UQV2\|V4UQV2_9ROSI	Diacylglycerol kinase {ECO:0000256\|RuleBase:RU361128}
TAIR10	AT4G30340.1	diacylglycerol kinase 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	73069412	73079797	+
GWHAAZE00000009	mRNA	73069412	73079797	+
GWHAAZE00000009	exon	73069412	73069640	+
GWHAAZE00000009	exon	73072279	73072401	+
GWHAAZE00000009	exon	73072996	73073085	+
GWHAAZE00000009	exon	73073488	73073573	+
GWHAAZE00000009	exon	73076380	73076467	+
GWHAAZE00000009	exon	73077005	73077080	+
GWHAAZE00000009	exon	73077284	73077366	+
GWHAAZE00000009	exon	73077662	73077732	+
GWHAAZE00000009	exon	73078171	73078248	+
GWHAAZE00000009	exon	73078831	73078918	+
GWHAAZE00000009	exon	73079522	73079797	+
GWHAAZE00000009	five_prime_UTR	73069412	73069430	+
GWHAAZE00000009	CDS	73069431	73069640	+
GWHAAZE00000009	CDS	73072279	73072401	+
GWHAAZE00000009	CDS	73072996	73073085	+
GWHAAZE00000009	CDS	73073488	73073573	+
GWHAAZE00000009	CDS	73076380	73076467	+
GWHAAZE00000009	CDS	73077005	73077080	+
GWHAAZE00000009	CDS	73077284	73077366	+
GWHAAZE00000009	CDS	73077662	73077732	+
GWHAAZE00000009	CDS	73078171	73078248	+
GWHAAZE00000009	CDS	73078831	73078918	+
GWHAAZE00000009	CDS	73079522	73079797	+

Transcript Sequence
>GWHTAAZE032262 GGAGGAATTGAAGCACAAGATGATCATGCCCGAGTATCTGCGCTTTGCCATGCGCGATGCTATTAAGTCAAAGGGGGCAGAATCCGGCCTTGATTATGCTAACGCCGCCAACGGAAACTCCAACGAGGCACCGGAGGGACCGCTGGTGGTGTTTATTAATTCACGGAGCGGCGGACGGCACGGACCGGAGCTTAAAGTGAGGCTCCAGGAGTTAATGAGTGAGGAACAGGTTTTTGATCTTTCAGATGTGAGGCCTCATGAATTTGTTCAGTATGGACTAAGTTGCCTAGAGAAATTTGCTGGTCTTGGGGACCGCTGTGCCAAAGAGACCCGTGAAAAGCTCAGGGTTGTGGTAGCAGGAGGCGATGGTACAGTGGGTTGGGTCCTTGGGTGCCTTGGAGATCTTAACAAACAGGGCCGAATGCCTGTTCCACCAGTAGCAGGCGGTTCGTTTCCTTTTAACTGGAAATCAGGAGTGAAAAGAACACTTGACAAGGCTACCAAGGGTCCAGTTTGCCGTTTGGATAGTTGGGATATTGTAATATCAATGCCAGCTGGGGAAAAGGTGGATACACCACATGCTCTGAAGCCAACAGAAGACTGTACTCTTGATCAGGGACTGGAAATTGAAGGGGAGTTGCCTGAGAAAGTTGCATGCCATGAAGGAGTGTTTTATAACTACTTTAGTATAGGAATGGATGCCCAAGTTGCTTATGGTTTCCACCATTTACGAAATGAAAAACCATACCTTGCACAAGGTCCTATTACAAACAAGCTGATTTACTCTGGATATACTTGCACACAAGGATGGTTTTTCACACCTTGTATTGCTAATCCGAGTTTAAGAGGACTGAAGAACATTTTAAGGATACACATCAAAAGGGCAAATTGCTCCGACTGGGAGTCGATTCCCGTTCCTTCAAGTGTTAGGGCCATAGTTGCTTTAAATCTTCATAGCTATGCGAGTGGACGAAATCCATGGGGTAATCTGAAGCCCAAGTATATGGAAAAGAAAGGGTTTGTTGAGGCTCATGCTGATGACGGTCTACTAGAAATATTTGGGCTAAAACAAGGATGGCATGCATCTTTCGTAATGGTGGAACTTATATCGGCCAAACACATAGCTCAGGCCTCGTCGATCAGATTCGAGTTTCGAGGGGGAGAGTGGAAAGAAGCTTTCATGCAAATGGACGGCGAGCCATGGAAACAGCCAATGAACAAAGAGTATTCAACTTATGTGGAGATCAAAAGGGTCCCGTTTCAATCTGTTATGGTCAGTGGCGAGTAA

Network for GWHGAAZE032224

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00781.25	DAGK_cat	41	145	1.90E-15
PF00609.20	DAGK_acc	217	394	4.80E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00901	dgkA, DGK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564
		Phosphatidylinositol signaling system	map04070
		Phospholipase D signaling pathway	map04072
		Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0007205	biological_process	protein kinase C-activating G protein-coupled receptor signaling pathway
GO:0016301	molecular_function	kinase activity
GO:0004143	molecular_function	diacylglycerol kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.459
	SRR3591706	second leaf	52.593
	SRR3591707	mature leaf	87.000
	SRR3591708	Shoot apex	45.483
	SRR3591709	Stem	74.457
	SRR3591710	White floral bud	41.382
	SRR3591711	White flower	52.106
	SRR3591712	Green floral bud	37.825
	SRR3591713	Yellow flower	47.393
SRP173429	SRR8316895	Juvenile bud stage	30.967
	SRR8316896	Juvenile bud stage	57.653
	SRR8316897	Juvenile bud stage	21.276
	SRR8316894	Third green stage	14.880
	SRR8316900	Third green stage	32.177
	SRR8316901	Third green stage	33.708
	SRR8316898	Complete white stage	15.101
	SRR8316899	Complete white stage	44.965
	SRR8316903	Complete white stage	23.083
	SRR8316902	Silver flowering stage	18.296
	SRR8316904	Silver flowering stage	24.895
	SRR8316905	Silver flowering stage	13.497
	SRR8316906	Gold flowering stage	52.798
	SRR8316907	Gold flowering stage	42.080
	SRR8316908	Gold flowering stage	47.140
SRP132670	SRR6706286	Control	33.778
	SRR6706287	Light intensity 50%	35.648
	SRR6706288	Light intensity 20%	37.555
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.573
	CNS0095593	Slightly white alabastrum(diploid) 2	27.882
	CNS0095594	Slightly white alabastrum(diploid) 3	38.892
	CNS0095595	Whole white alabastrum(diploid) 2	23.846
	CNS0095596	Whole white alabastrum(diploid) 3	16.638
	CNS0095597	Whole white alabastrum(diploid) 4	21.773
	CNS0095598	Silvery flower (diploied) 1	36.118
	CNS0095599	Silvery flower (diploied) 2	34.654
	CNS0095600	Silvery flower (diploied) 3	47.363
	CNS0095601	Golden flower (diploid) 1	36.542
	CNS0095602	Golden flower (diploid) 2	46.626
	CNS0095603	Golden flower (diploid) 3	45.022
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.013
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.803
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.403
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.539
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.917
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.947
	CNS0095610	Silvery flower (tetraploid) 1	56.183
	CNS0095611	Silvery flower (tetraploid) 2	51.993
	CNS0095612	Silvery flower (tetraploid) 3	28.305
	CNS0095613	Golden flower (tetraploid) 1	35.045
	CNS0095614	Golden flower (tetraploid) 2	54.244
	CNS0095615	Golden flower (tetraploid) 3	51.977
CRA001975	CRR073297	Stem 1	34.708
	CRR073298	Stem 2	38.020
	CRR073299	Stem 3	31.296
	CRR073300	Leaf 1	29.074
	CRR073301	Leaf 2	27.882
	CRR073302	Leaf 3	23.840
	CRR073303	Juvenile bud 1	21.888
	CRR073304	Juvenile bud 2	14.430
	CRR073305	Juvenile bud 3	24.565
	CRR073306	Third green 1	22.227
	CRR073307	Third green 2	21.638
	CRR073308	Third green 3	20.747
	CRR073309	Second white 1	12.596
	CRR073310	Second white 2	12.933
	CRR073311	Second white 3	15.225
	CRR073312	Silver flowering 1	13.936
	CRR073313	Silver flowering 2	12.551
	CRR073314	Silver flowering 3	15.466
	CRR073315	Gold flowering 1	18.516
	CRR073316	Gold flowering 2	23.810
	CRR073317	Gold flowering 3	12.871
	CRR073318	Tawny withering 1	27.778
	CRR073319	Tawny withering 2	32.177
	CRR073320	Tawny withering 3	30.653