Gene detail

Detail information of GWHGAAZE032220

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004169068.1	0	PREDICTED: preprotein translocase subunit SCY1, chloroplastic-like [Cucumis sativus]
COG	YP_007062764.1	2E-109	protein translocase subunit SecY
Swissprot	tr\|Q38885\|SCY1_ARATH	0	Preprotein translocase subunit SCY1, chloroplastic (Precursor)
trEMBL	tr\|A0A0A0LWQ8\|A0A0A0LWQ8_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN65282.1}
TAIR10	AT2G18710.1	0	SECY homolog 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	72979562	72986418	-
GWHAAZE00000009	mRNA	72979562	72986418	-
GWHAAZE00000009	exon	72986408	72986418	-
GWHAAZE00000009	exon	72985652	72985806	-
GWHAAZE00000009	exon	72984743	72985128	-
GWHAAZE00000009	exon	72983666	72983965	-
GWHAAZE00000009	exon	72982418	72982552	-
GWHAAZE00000009	exon	72981742	72981865	-
GWHAAZE00000009	exon	72981100	72981263	-
GWHAAZE00000009	exon	72979562	72979777	-
GWHAAZE00000009	CDS	72986408	72986418	-
GWHAAZE00000009	CDS	72985652	72985806	-
GWHAAZE00000009	CDS	72984743	72985128	-
GWHAAZE00000009	CDS	72983666	72983965	-
GWHAAZE00000009	CDS	72982418	72982552	-
GWHAAZE00000009	CDS	72981742	72981865	-
GWHAAZE00000009	CDS	72981100	72981263	-
GWHAAZE00000009	CDS	72979562	72979777	-

Transcript Sequence
>GWHTAAZE032258 ATGGGTTTGAGCGAGAGCGCTGTTTTTGATCCGCTTGGTATCAACCCAGATAAGTTATCAGGTCTAAATTCTGCATGGGAAAGTGTTCTAGGGTTGCTTTCACAAACTTTTGAAAGTGCCTCTAGAACAAAAAGGGATAAATCTTCTTCTGGTAGAGGAGCAGCAGCTGCAATTGAGGACACTTCAATTGATTTTGGGGACTTCTTCAAAGGTCCATTACCAGGAAAATTTCTTATGCTCCTAGGGTATTTGGCCTTATCTCGACTTGGAATATATATTCCTCTAGGAGGTGTAAATAGGGAAGCTTTTACTGGGAATTTAGATCAGAACAGTTTATTGAGCACCTTGGATTCGTTTTCCGGAGGAGGAATTGGTAGACTTGGAATTTGTTCCCTTGGTATTGTTCCGTTCATTAATGCGCAGATAGTGTTTCAGCTTCTAACTCAAATCTACCCGAAATTGCAAGAACTCCAGAAAAGAGAAGGGGAAGCGGGAAGAAAGAAAATTCTTCAATATACTCGCTATGCCTCTGTTGGATTTGCCATTGTACAGGCAATTGGGCAAGCACTGTTCCTTCGCCCTTATGTCGATGACTTTAGTACCCAGTGGGTTCTTTCTTCTGTAACTCTGTTAACACTTGGCTCGGTACTTACAACATATATTGGGGAACGGATTACAGACTTAAAACTTGGAAACGGCACGTCTCTGTTGATCTTTACAAGCATTATATCTTACTTGCCGGCATCCTTCGGTAGAACAGTTGCAGAGGCATTTCAAGAGGGTAATTACATTGGACTCGTTGCTACCATTTTCTCCTTCTTCCTGTTGGTTCTTAGCATTGTCTACGTTCAGTGCAAGCAACAAGTTGCTTACGTTGTTCTCGACAAAGGGTTTCAGGAAGCTGAGAGAAAAATTCCGCTTAATTATGCATCCAGATATAGTAGTAGAACTGGAGGGATTCAGAAATCTGCTTACTTACCCTTTAAGGTGAATAGTTCAGGAGTTATGCCAATTATCTTTTCTACATCTTCATTAGCTCTTCCTGCCACTCTAGCACGCTTCACTGGTTTAAGTGCGCTAAAACAGGCTGCAGTCGCTTTAAACCCAGGGGGTGCTTTGTATCTGCCAACAAACATTGTCATGATAGCCTTCTTCAATTACTACTATACATTCCTACAGTTGGACCCTGACGACGTCAGTGAACAGTTGAAGCGCCAAGGTGCCTCTATCCCTCTTGTCCGACCCGGTAAAAGTACAGCCGCCTTCATAAAAACGGTTCTTGGTCGAATATCGGTTCTTGGGTCCGCCTTTTTGGCAATTCTTGCAGCAGGTCCCGCTGTTATCGAGCAAACTACGCACCTGACTGCTTTTCGGGGATTCGCGGGCACATCTGTTTTGATTCTTGTTGGTTGTGCTACAGACACAGCAAGAAAAGTTCAAGCAGAGATAATCTCCCAAAAGTACAAGAACATTGAGTTCTATGACATTGAC

Network for GWHGAAZE032220

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00344.21	SecY	129	475	4.80E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10956	SEC61A	Protein export	map03060
		Protein processing in endoplasmic reticulum	map04141
		Phagosome	map04145

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport
GO:0016020	cellular_component	membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.222
	SRR3591706	second leaf	31.709
	SRR3591707	mature leaf	29.526
	SRR3591708	Shoot apex	32.264
	SRR3591709	Stem	11.637
	SRR3591710	White floral bud	30.119
	SRR3591711	White flower	153.066
	SRR3591712	Green floral bud	18.912
	SRR3591713	Yellow flower	46.869
SRP173429	SRR8316895	Juvenile bud stage	22.464
	SRR8316896	Juvenile bud stage	27.409
	SRR8316897	Juvenile bud stage	12.208
	SRR8316894	Third green stage	10.553
	SRR8316900	Third green stage	23.533
	SRR8316901	Third green stage	24.194
	SRR8316898	Complete white stage	13.633
	SRR8316899	Complete white stage	34.317
	SRR8316903	Complete white stage	20.607
	SRR8316902	Silver flowering stage	82.395
	SRR8316904	Silver flowering stage	117.330
	SRR8316905	Silver flowering stage	95.843
	SRR8316906	Gold flowering stage	147.156
	SRR8316907	Gold flowering stage	132.321
	SRR8316908	Gold flowering stage	146.959
SRP132670	SRR6706286	Control	17.982
	SRR6706287	Light intensity 50%	20.511
	SRR6706288	Light intensity 20%	23.546
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.345
	CNS0095593	Slightly white alabastrum(diploid) 2	15.510
	CNS0095594	Slightly white alabastrum(diploid) 3	15.990
	CNS0095595	Whole white alabastrum(diploid) 2	15.348
	CNS0095596	Whole white alabastrum(diploid) 3	14.573
	CNS0095597	Whole white alabastrum(diploid) 4	15.155
	CNS0095598	Silvery flower (diploied) 1	31.723
	CNS0095599	Silvery flower (diploied) 2	25.487
	CNS0095600	Silvery flower (diploied) 3	57.781
	CNS0095601	Golden flower (diploid) 1	28.738
	CNS0095602	Golden flower (diploid) 2	42.611
	CNS0095603	Golden flower (diploid) 3	42.044
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.829
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.825
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.046
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.533
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.571
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.553
	CNS0095610	Silvery flower (tetraploid) 1	71.698
	CNS0095611	Silvery flower (tetraploid) 2	81.256
	CNS0095612	Silvery flower (tetraploid) 3	91.637
	CNS0095613	Golden flower (tetraploid) 1	51.838
	CNS0095614	Golden flower (tetraploid) 2	63.851
	CNS0095615	Golden flower (tetraploid) 3	254.052
CRA001975	CRR073297	Stem 1	24.514
	CRR073298	Stem 2	19.449
	CRR073299	Stem 3	21.040
	CRR073300	Leaf 1	21.619
	CRR073301	Leaf 2	19.168
	CRR073302	Leaf 3	12.344
	CRR073303	Juvenile bud 1	15.288
	CRR073304	Juvenile bud 2	10.191
	CRR073305	Juvenile bud 3	15.485
	CRR073306	Third green 1	71.734
	CRR073307	Third green 2	47.292
	CRR073308	Third green 3	56.810
	CRR073309	Second white 1	48.626
	CRR073310	Second white 2	38.483
	CRR073311	Second white 3	41.779
	CRR073312	Silver flowering 1	24.648
	CRR073313	Silver flowering 2	14.833
	CRR073314	Silver flowering 3	13.990
	CRR073315	Gold flowering 1	52.731
	CRR073316	Gold flowering 2	84.174
	CRR073317	Gold flowering 3	53.938
	CRR073318	Tawny withering 1	14.081
	CRR073319	Tawny withering 2	14.254
	CRR073320	Tawny withering 3	12.085