Gene detail

Detail information of GWHGAAZE032194

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008223590.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g23950 [Prunus mume]
COG	YP_001958461.1	5E-19	hypothetical protein Aasi_1443
Swissprot	tr\|Q0WVM4\|Y2239_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At2g23950 (Precursor)
trEMBL	tr\|M1AS12\|M1AS12_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400028991}
TAIR10	AT2G23950.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	72462663	72468996	+
GWHAAZE00000009	mRNA	72462663	72468996	+
GWHAAZE00000009	exon	72462663	72462683	+
GWHAAZE00000009	exon	72463291	72463391	+
GWHAAZE00000009	exon	72463573	72463644	+
GWHAAZE00000009	exon	72464174	72464317	+
GWHAAZE00000009	exon	72464441	72464512	+
GWHAAZE00000009	exon	72464654	72464713	+
GWHAAZE00000009	exon	72465155	72465255	+
GWHAAZE00000009	exon	72465854	72466198	+
GWHAAZE00000009	exon	72467692	72468033	+
GWHAAZE00000009	exon	72468599	72468996	+
GWHAAZE00000009	CDS	72462663	72462683	+
GWHAAZE00000009	CDS	72463291	72463391	+
GWHAAZE00000009	CDS	72463573	72463644	+
GWHAAZE00000009	CDS	72464174	72464317	+
GWHAAZE00000009	CDS	72464441	72464512	+
GWHAAZE00000009	CDS	72464654	72464713	+
GWHAAZE00000009	CDS	72465155	72465255	+
GWHAAZE00000009	CDS	72465854	72466198	+
GWHAAZE00000009	CDS	72467692	72468033	+
GWHAAZE00000009	CDS	72468599	72468996	+

Transcript Sequence
>GWHTAAZE032232 ATGAACCAAGGAACCCTGAAGGATCCACATGGAGCTCTAAGCAATTGGGATGAAGACTCTGTAGACCCATGTAGTTGGGCTATGATTACTTGTTCTTCCCCTGATAATCTTGTTACTGTCCTAGGAGCGCCAAGTGAAGGTTTATCAGGGACTTTGTCTGGGGTGATAGCTAACCTCACAAACCTCCGTCAAGTATTGTTGCAGAACAATAATATAACAGGCCAAATCCCACAGGGGCTAGGCAACCTTAAGAACCTTCAGACACTAGATTTGTCTAATAACAAGTTTTTTGGTCAAGTGCCTGACTCTCTTGCCCTATTGAGTGGTCTTCAATATCTAAGGTTGAACAACAATAGCCTGTCTGGTGCTATTCCCCTGTCTCTAGCCACTGTCCCTCAACTTGCTTTCTTGGACTTGTCATACAACAATCTCAGTGGACCTGTGCCCAAGTTTCCTGCCAAAACATTCAATGTTGCTGGCAATCTTCTGATTTGTGGACGCCATTCTACTCAAGGTTGCTCTGGATCAACCACTCCTGATCCTCTCTCATTCTCTCTAAACTCATCCCCTGATATGCAAGAAGAAGGACTAGTAAGCCTAGGGAACCTGAGAAACTTCACAATTAAAGAGCTCCAACACGCAACAGACAACTTCAGCTCCAAGAACATACTTGGAGCTGGAGGATTTGGGAATGTGTACAAGGGCAAGTTAGGGGACGGAACAATGGTGGCAGTGAAGCGGTTGAAGGATGTGACTGGAACTGCTGGAGAATCACAGTTCCGGACGGAATTGGAGCTTATTAGCTTGGCTGTTCACCGGAATTTGCTCCGGTTAATTGGTTGCTGTGCTACCTCGAATGAGAGGCTTTTGGTGTACCCTTACATGTCTAATGGCAGTGTGGCCTCGAGGCTTAGAGGAAAGCCGGCACTAGACTGGAATGCAAGAAAAAGAATAGCAATAGGAGCTGCGAGAGGTCTTTTATATCTACACGAGCAATGTGATCCAAAGATAATCCACAGAGATGTGAAAGCAGCTAATGTCCTATTGGACGACTACTGCGAGGCTGTTGTAGGTGATTTTGGCCTTGCTAAGCTTCTCGATCATGCTGACTCGCATGTCACCACAGCTGTTCGTGGTACGGTTGGTCACATTGCACCTGAGTATCTCTCCACTGGCCAGTCATCTGAGAAAACCGACGTGTTTGGCTTTGGTATTCTACTTTTAGAGCTTATAACTGGGATGAGAGTTCTTGAATTTGGTCGTCCCCTAACAGAACATAAGAAAGAACTTTTGCAGGTAAAGAAGATTCAGCATGAGAAGAAAGTGGAAGCATTAGTGGACAGAGAGCTAGGGAGTAACTACGACCGGATCGAGGTGGGGGAGATGCTACAAGTGGCTCTACTTTGCACCCAATACTTGCCGGCCCACCGCCCCAAAATGTCCGAGGTGGTCCGCATGCTCGAAGGCGACGGCTTAGCCGAAAAATGGGCTAGTTCTCATACCCATATTAATGCCAACACTGCTAGTTTCAATAGAACTCACTTGCGGACCATGCATGATGGTAATAATGATCATGACCATTCGAGCATGTTCGGCATGATGATAATGGATGATGACCATGATGACCATGCCATGGAGCTCTCTGGTCCAAGATAA

Network for GWHGAAZE032194

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	6	32	3.40E-08
PF12799.8	LRR_4	60	100	9.70E-07
PF00069.26	Pkinase	219	484	1.80E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.909
	SRR3591706	second leaf	9.079
	SRR3591707	mature leaf	5.341
	SRR3591708	Shoot apex	25.148
	SRR3591709	Stem	19.454
	SRR3591710	White floral bud	19.759
	SRR3591711	White flower	16.874
	SRR3591712	Green floral bud	16.002
	SRR3591713	Yellow flower	8.409
SRP173429	SRR8316895	Juvenile bud stage	4.746
	SRR8316896	Juvenile bud stage	6.496
	SRR8316897	Juvenile bud stage	3.579
	SRR8316894	Third green stage	3.473
	SRR8316900	Third green stage	7.796
	SRR8316901	Third green stage	7.700
	SRR8316898	Complete white stage	2.907
	SRR8316899	Complete white stage	14.839
	SRR8316903	Complete white stage	7.050
	SRR8316902	Silver flowering stage	2.493
	SRR8316904	Silver flowering stage	6.214
	SRR8316905	Silver flowering stage	1.451
	SRR8316906	Gold flowering stage	3.699
	SRR8316907	Gold flowering stage	5.144
	SRR8316908	Gold flowering stage	6.214
SRP132670	SRR6706286	Control	4.721
	SRR6706287	Light intensity 50%	4.125
	SRR6706288	Light intensity 20%	4.720
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.484
	CNS0095593	Slightly white alabastrum(diploid) 2	11.571
	CNS0095594	Slightly white alabastrum(diploid) 3	7.371
	CNS0095595	Whole white alabastrum(diploid) 2	8.870
	CNS0095596	Whole white alabastrum(diploid) 3	8.143
	CNS0095597	Whole white alabastrum(diploid) 4	6.850
	CNS0095598	Silvery flower (diploied) 1	12.451
	CNS0095599	Silvery flower (diploied) 2	8.731
	CNS0095600	Silvery flower (diploied) 3	9.986
	CNS0095601	Golden flower (diploid) 1	6.659
	CNS0095602	Golden flower (diploid) 2	5.414
	CNS0095603	Golden flower (diploid) 3	6.299
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.195
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.079
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.526
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.962
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.934
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.938
	CNS0095610	Silvery flower (tetraploid) 1	13.056
	CNS0095611	Silvery flower (tetraploid) 2	11.445
	CNS0095612	Silvery flower (tetraploid) 3	8.378
	CNS0095613	Golden flower (tetraploid) 1	7.129
	CNS0095614	Golden flower (tetraploid) 2	9.926
	CNS0095615	Golden flower (tetraploid) 3	6.863
CRA001975	CRR073297	Stem 1	13.391
	CRR073298	Stem 2	16.087
	CRR073299	Stem 3	18.842
	CRR073300	Leaf 1	22.998
	CRR073301	Leaf 2	20.434
	CRR073302	Leaf 3	14.265
	CRR073303	Juvenile bud 1	18.432
	CRR073304	Juvenile bud 2	9.127
	CRR073305	Juvenile bud 3	26.884
	CRR073306	Third green 1	5.895
	CRR073307	Third green 2	11.195
	CRR073308	Third green 3	15.235
	CRR073309	Second white 1	1.504
	CRR073310	Second white 2	2.931
	CRR073311	Second white 3	1.059
	CRR073312	Silver flowering 1	0.463
	CRR073313	Silver flowering 2	0.527
	CRR073314	Silver flowering 3	0.426
	CRR073315	Gold flowering 1	10.283
	CRR073316	Gold flowering 2	9.755
	CRR073317	Gold flowering 3	13.390
	CRR073318	Tawny withering 1	22.223
	CRR073319	Tawny withering 2	31.042
	CRR073320	Tawny withering 3	22.279