Detail information of GWHGAAZE032168


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011078827.18.0346E-110PREDICTED: zinc finger CCCH domain-containing protein 14-like [Sesamum indicum]
Swissprottr|Q7F8R0|C3H14_ORYSJ4E-82Zinc finger CCCH domain-containing protein 14
trEMBLtr|F6HLJ6|F6HLJ6_VITVI4E-108Putative uncharacterized protein {ECO:0000313|EMBL:CCB55252.1}
TAIR10AT3G12130.17E-49KH domain-containing protein / zinc finger (CCCH type) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7193561571939356-
GWHAAZE00000009mRNA7193561571939356-
GWHAAZE00000009exon7193931071939356-
GWHAAZE00000009exon7193763771937944-
GWHAAZE00000009exon7193561571936238-
GWHAAZE00000009CDS7193931071939356-
GWHAAZE00000009CDS7193763771937944-
GWHAAZE00000009CDS7193588371936238-
GWHAAZE00000009three_prime_UTR7193561571935882-
Transcript Sequence

Network for GWHGAAZE032168

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14608.7zf-CCCH_220300.12
PF00642.25zf-CCCH72977.30E-06
PF00013.30KH_11191722.00E-08
PF00642.25zf-CCCH2032272.20E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding
GO:0003723molecular_functionRNA binding
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.439
SRR3591706second leaf11.264
SRR3591707mature leaf16.792
SRR3591708Shoot apex30.682
SRR3591709Stem25.126
SRR3591710White floral bud20.743
SRR3591711White flower32.550
SRR3591712Green floral bud25.844
SRR3591713Yellow flower20.527
SRP173429 SRR8316895Juvenile bud stage 15.195
SRR8316896Juvenile bud stage 17.891
SRR8316897Juvenile bud stage 8.295
SRR8316894Third green stage 5.323
SRR8316900Third green stage 19.047
SRR8316901Third green stage 17.222
SRR8316898Complete white stage 6.882
SRR8316899Complete white stage 23.814
SRR8316903Complete white stage 9.968
SRR8316902Silver flowering stage4.838
SRR8316904Silver flowering stage6.872
SRR8316905Silver flowering stage2.860
SRR8316906Gold flowering stage 10.577
SRR8316907Gold flowering stage 11.079
SRR8316908Gold flowering stage 7.917
SRP132670SRR6706286Control16.352
SRR6706287Light intensity 50%14.054
SRR6706288Light intensity 20%16.857
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.918
CNS0095593Slightly white alabastrum(diploid) 225.600
CNS0095594Slightly white alabastrum(diploid) 322.040
CNS0095595Whole white alabastrum(diploid) 223.930
CNS0095596Whole white alabastrum(diploid) 318.718
CNS0095597Whole white alabastrum(diploid) 420.158
CNS0095598Silvery flower (diploied) 120.822
CNS0095599Silvery flower (diploied) 218.170
CNS0095600Silvery flower (diploied) 319.348
CNS0095601Golden flower (diploid) 116.159
CNS0095602Golden flower (diploid) 218.024
CNS0095603Golden flower (diploid) 318.589
CNS0095604Slightly white alabastrum(tetraploid) 128.723
CNS0095605Slightly white alabastrum(tetraploid) 231.574
CNS0095606Slightly white alabastrum(tetraploid) 341.977
CNS0095607Whole white alabastrum(tetraploid) 120.607
CNS0095608Whole white alabastrum(tetraploid) 218.406
CNS0095609Whole white alabastrum(tetraploid) 324.540
CNS0095610Silvery flower (tetraploid) 123.668
CNS0095611Silvery flower (tetraploid) 224.808
CNS0095612Silvery flower (tetraploid) 319.780
CNS0095613Golden flower (tetraploid) 121.693
CNS0095614Golden flower (tetraploid) 220.276
CNS0095615Golden flower (tetraploid) 313.194
CRA001975CRR073297Stem 123.576
CRR073298Stem 220.178
CRR073299Stem 328.228
CRR073300Leaf 119.837
CRR073301Leaf 221.567
CRR073302Leaf 323.776
CRR073303Juvenile bud 119.983
CRR073304Juvenile bud 213.493
CRR073305Juvenile bud 326.297
CRR073306Third green 17.720
CRR073307Third green 26.166
CRR073308Third green 37.549
CRR073309Second white 110.274
CRR073310Second white 210.536
CRR073311Second white 36.142
CRR073312Silver flowering 17.569
CRR073313Silver flowering 29.591
CRR073314Silver flowering 38.667
CRR073315Gold flowering 118.054
CRR073316Gold flowering 223.230
CRR073317Gold flowering 323.273
CRR073318Tawny withering 130.634
CRR073319Tawny withering 225.530
CRR073320Tawny withering 332.201