Gene detail

Detail information of GWHGAAZE032157

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011079403.1	0	PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Sesamum indicum]
COG	YP_006439308.1	8E-22	putative transcriptional regulator, Crp/Fnr family
Swissprot	tr\|Q8RWS9\|CNGC5_ARATH	0	Probable cyclic nucleotide-gated ion channel 5
trEMBL	tr\|A0A022R415\|A0A022R415_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU34343.1}
TAIR10	AT5G57940.2	0	cyclic nucleotide gated channel 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	71727494	71733516	-
GWHAAZE00000009	mRNA	71727494	71733516	-
GWHAAZE00000009	exon	71727494	71728144	-
GWHAAZE00000009	exon	71728548	71728784	-
GWHAAZE00000009	exon	71729086	71729197	-
GWHAAZE00000009	exon	71730196	71730470	-
GWHAAZE00000009	exon	71731396	71731605	-
GWHAAZE00000009	exon	71732769	71733348	-
GWHAAZE00000009	exon	71733479	71733516	-
GWHAAZE00000009	CDS	71733479	71733516	-
GWHAAZE00000009	CDS	71732769	71733348	-
GWHAAZE00000009	CDS	71731396	71731605	-
GWHAAZE00000009	CDS	71730196	71730470	-
GWHAAZE00000009	CDS	71729086	71729197	-
GWHAAZE00000009	CDS	71728548	71728784	-
GWHAAZE00000009	CDS	71727494	71728144	-

Transcript Sequence
>GWHTAAZE032195 ATGTCAAGATTCTTTATGTACATGGTAGATCTGAATAAGCTGGAAGAGTCGGACTCTACATTAGCATCACCATCTGCCTCAGTTGCAATGAGCAAATGTGGTTTAACCGGTGCTAGTCATTCAACTAACACCCCATCTAGATCATTTAAAAAAGGAATGAAAAGCAGATCTGATGGACTAAAATCAATCGGTCAATCACTTGGATTCGGAGTCTCTCAAGCCGTATTCCCCGAAGATCTTAAAGTTTCGGAGAAAAAGATATTTAAGATATTTGATCCACAAGATAAATTCCTCCTTTTGTGGAACAAACTTTTTGTCATATCTTGTATAGTTGCTGTGTCTGTGGATCCACTTTTCTTCTATCTTCCTGTTTTTGATCAATCATCCCATTGTTTAGGGCTTGACCGAAAGCTTGCAATTACGGCGACAACATTGAGAACGATTGTTGATGCTTTTTATCTTATTCATATGGCTCTTCAGTTTCAAACGGCTTATATAGCTCCATCATCTCAGGTTTTTGGACGTGGTGAACTTGTGATAGATCCTGCAAAAATAGCTAAACGATACTTGCGGTCCTATTTTATCGTTGATTTTCTTTCTGTGCTACCTCTACCACAGATTGTTTTATGGAGGTTTTTGCATAGATCAAAAGGTTCGGATGTGGCTACAAAACAAGCCTTGATTTTTGTTATCTTCGTTCAGTATATCCCTAGATTTGTTAGAATTTTACCCTTAACGTCGGAACTGAAAAGGACTGCGGGCGTCTTTGCTGAAACTGCATGGGCTGGTGCTGTTTACTATTTGCTCTTGTACATGCTCGCCAGTCATATAGTTGGGGCTTTCTGGTACTTATTATCAGTAGAACGAAATGATACATGCTGGAAGAAAGCTTGTAAAGCAAGTGGGAAATGTGACAAAAATTTCTTATATTGCGGTCACCAATACATGGAAGGTTACAATGATTGGAGTAGAATAAGCGCATCAGTTCTAAACTCAGCTTGTTTTGTAAGTAGTGATGATGATAGGAATGGACCGTTCGATTTTGGAATCTTCAAGCAGGCTTTATCATCAGGCATTGTTTCATCCAAGGACTTCCTTTCCAATACACTTGGCCAGGGTCTTGAAACCAGCACCTATCCAGGAGAGTCGATATTTTCTATTGGATTAGCCATACTGGGGCTCATTCTCTTCGCTCTATTAATCGGCAACATGCAGACATACCTTCAGTCTCTTACAATTCGGCTAGAAGAAATGAGAGTGAAAAGGAGAGACTCGGAGCAGTGGATGCATCATCGCTTGCTCCCTCAAGAACTTCGGGAACGGGTTCGCTGTTATGATCAGTACAAATGGCTCGCAACACGCGGAGTGGAAGAAAAAAATTTGATCCAAAATCTACCCAAGGATCTCAGAAGGGACATAAAGCGCCATCTTTGTCTTGCTTTGGTGAAGAGGGTTCCCCTGTTTGAGAGCATGGACAACAAATTGCTCGACGCCATTTGTGAGCGATTGAAACCGTGCTTATACACTGAACACAGTTACATATTCCGCGAAGGAGAGCCCGTTGACGAGATGCTCTTCATCATACGTGGCCGCCTCGAGAGTGAAACCACCAATAACGGCCGAACCGGTTTTTTCAACCAAAGTTTGCTAAAAGAAGGCGATTTTTGTGGTGAGGAGCTTCTAAATTGGGCACTAGAATCTAAATCTGGCGCCAACCTCCCATTGTCAACCCGGACCGTTAAGGCAAAGACTGAGGTCGAAGCCTTTGCCCTAACCGCGGAGGAATTGAGGTTTGTCGCTAATCAGTTCAGGATGCTACATAGTCGACAGGTCAAACACACATTCCGTTTTTACTCCCATCATTGGAGGGCATGGGGTGCTTGTTTCATACAGGCAGCATGGCGGCGGTATTTGAGAAGGAAAGCTTTGGATACTCGGCCGAGAGGTGGTGGTTCTTTTAGCATAGGGGCTACTATCTTGGCATCTAAGTTTGCGGCGAATGCTCTTCGTGGGGTCCACCGGAACCGGAATCTTAACAGTGATAGGGAATTAGTGAAGTTACAGAAGCCCCCGGAGCTGGATTTCGATGGCGGTGTAGATTGA

Network for GWHGAAZE032157

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	100	413	3.40E-31
PF00027.30	cNMP_binding	508	599	4.70E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.065
	SRR3591706	second leaf	3.009
	SRR3591707	mature leaf	6.900
	SRR3591708	Shoot apex	7.304
	SRR3591709	Stem	9.772
	SRR3591710	White floral bud	6.455
	SRR3591711	White flower	8.539
	SRR3591712	Green floral bud	8.261
	SRR3591713	Yellow flower	3.781
SRP173429	SRR8316895	Juvenile bud stage	7.500
	SRR8316896	Juvenile bud stage	9.793
	SRR8316897	Juvenile bud stage	4.925
	SRR8316894	Third green stage	3.132
	SRR8316900	Third green stage	8.870
	SRR8316901	Third green stage	8.818
	SRR8316898	Complete white stage	3.776
	SRR8316899	Complete white stage	12.651
	SRR8316903	Complete white stage	5.949
	SRR8316902	Silver flowering stage	3.338
	SRR8316904	Silver flowering stage	4.243
	SRR8316905	Silver flowering stage	2.071
	SRR8316906	Gold flowering stage	6.450
	SRR8316907	Gold flowering stage	5.238
	SRR8316908	Gold flowering stage	4.062
SRP132670	SRR6706286	Control	7.775
	SRR6706287	Light intensity 50%	8.438
	SRR6706288	Light intensity 20%	8.630
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.109
	CNS0095593	Slightly white alabastrum(diploid) 2	4.121
	CNS0095594	Slightly white alabastrum(diploid) 3	7.214
	CNS0095595	Whole white alabastrum(diploid) 2	7.762
	CNS0095596	Whole white alabastrum(diploid) 3	5.171
	CNS0095597	Whole white alabastrum(diploid) 4	7.767
	CNS0095598	Silvery flower (diploied) 1	8.455
	CNS0095599	Silvery flower (diploied) 2	7.638
	CNS0095600	Silvery flower (diploied) 3	7.810
	CNS0095601	Golden flower (diploid) 1	8.738
	CNS0095602	Golden flower (diploid) 2	6.490
	CNS0095603	Golden flower (diploid) 3	5.628
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.567
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.680
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.754
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.592
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.714
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.473
	CNS0095610	Silvery flower (tetraploid) 1	10.264
	CNS0095611	Silvery flower (tetraploid) 2	8.660
	CNS0095612	Silvery flower (tetraploid) 3	7.777
	CNS0095613	Golden flower (tetraploid) 1	3.825
	CNS0095614	Golden flower (tetraploid) 2	6.344
	CNS0095615	Golden flower (tetraploid) 3	2.165
CRA001975	CRR073297	Stem 1	8.986
	CRR073298	Stem 2	8.048
	CRR073299	Stem 3	4.467
	CRR073300	Leaf 1	8.188
	CRR073301	Leaf 2	7.546
	CRR073302	Leaf 3	3.877
	CRR073303	Juvenile bud 1	5.651
	CRR073304	Juvenile bud 2	3.583
	CRR073305	Juvenile bud 3	6.150
	CRR073306	Third green 1	1.038
	CRR073307	Third green 2	1.054
	CRR073308	Third green 3	0.879
	CRR073309	Second white 1	4.643
	CRR073310	Second white 2	3.059
	CRR073311	Second white 3	1.918
	CRR073312	Silver flowering 1	1.184
	CRR073313	Silver flowering 2	1.699
	CRR073314	Silver flowering 3	1.213
	CRR073315	Gold flowering 1	6.138
	CRR073316	Gold flowering 2	6.023
	CRR073317	Gold flowering 3	2.681
	CRR073318	Tawny withering 1	3.903
	CRR073319	Tawny withering 2	6.569
	CRR073320	Tawny withering 3	2.382