Gene detail

Detail information of GWHGAAZE032146

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656596.1	3.2334E-168	PREDICTED: uncharacterized protein LOC100243222 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9ZUG9\|BH066_ARATH	7E-89	Transcription factor bHLH66
trEMBL	tr\|F6HYI3\|F6HYI3_VITVI	7E-169	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59747.1}
TAIR10	AT2G24260.1	2E-54	LJRHL1-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	71529392	71535295	+
GWHAAZE00000009	mRNA	71529392	71535295	+
GWHAAZE00000009	exon	71529392	71529787	+
GWHAAZE00000009	exon	71529875	71529964	+
GWHAAZE00000009	exon	71530339	71530497	+
GWHAAZE00000009	exon	71530595	71530660	+
GWHAAZE00000009	exon	71532150	71532215	+
GWHAAZE00000009	exon	71533211	71533279	+
GWHAAZE00000009	exon	71534888	71535295	+
GWHAAZE00000009	CDS	71529392	71529787	+
GWHAAZE00000009	CDS	71529875	71529964	+
GWHAAZE00000009	CDS	71530339	71530497	+
GWHAAZE00000009	CDS	71530595	71530660	+
GWHAAZE00000009	CDS	71532150	71532215	+
GWHAAZE00000009	CDS	71533211	71533279	+
GWHAAZE00000009	CDS	71534888	71535295	+

Transcript Sequence
>GWHTAAZE032184 ATGGCGAATAATACTTCTCAGATTCAACAACCTCACTTCGATCCATCGTCTTCTCACGACGATTTCCTCGAGCAAATGCTCACTTCACTCCCTTCTTGTTCGTGGCCGGACTTCTCCGCCGGCGGCAACCAGTATCAGAACTTCGACGATCCGCCAACGATGCTGGCCTCAAAGTTCCGGCAGCACCAGATCAGCGGCGGCGGTAACGGTGGTGCTGTAAAGTCGCTTTTGCTTCAGCAGCAGTTGTTGTCTAGAGGACTCGGCGGTGGATTCCGGTCACCGGCAGGAGATTCTTCCGGTCTCCTTTCGGTGCCTCTGAATCCAGGCGGCGGTGGAGAATCTTATGACCGGTCTCAGAATGACGTCGTTGGCGCCTCTTTCAAGTCCCTGAATCAGGGAGGAGATGGTTCAATTCAAGCCCTATACAATGGATTCACCGGATCTCTGCAAACATCGAATCAATCTCAGCATTTCCACCATTCTCAGGGAGGGGCGATGCAGGCGCAGAACTTTGGAGCAACAGCAGTGATGAATCAAGCACCGGCGTGTGGTGGTGGTTCCGGCAGTGGAGTGCCGTCGCAGCCTAGGCAGAGGGTTAGGGCACGAAGAGGACAGGCGACGGACCCTCACAGTATAGCCGAAAGGTTACGGAGAGAGAGAATTGCAGAGAGGATGAAGGCTCTGCAGGAACTCGTTCCCAATGCCAATAAGACGGACAAGGCTTCAATGCTGGATGAGATCATCGACTATGTCAAATTCCTCCAGCTTCAAGTCAAAGTTCTAAGCATGAGCAGATTGGGCGGTGCTGCAGCTGTTGCTCCTTTGGTTGCTGATATCTCATCTGAGGGAGGAGGTGACTGTTTACAAACTAGTGGTGGGCTTGGATTAGGACGGGGAAGTAACGGAACACAAACGGCAGCATCCTCATCAAACGACAGCATGACGGTGACGGAGCACCAAGTGGCAAAGCTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACCTTCAGGGTAAAGGTCTCTGCCTCATGCCTATCTCTCTTGCCACCGCCATCTCCACTGCCACTGGTCGGACCCACCAGCACCACAAAGCCGCCAACAACCCACTGTTATTCCATCCAAATGGCGGCGAGGGTGGTGGGCCCTCCTCCCCCAGCATTTCAGTTTTGACCGTCCAGTCAGCGACCACCACCATGGGTAACGGCATTAATGAGGCCTCCGTTAAAGACGCTACCTCCGTTTCCAAGCCGTGA

Network for GWHGAAZE032146

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	210	255	1.60E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.139
	SRR3591706	second leaf	13.366
	SRR3591707	mature leaf	5.904
	SRR3591708	Shoot apex	5.066
	SRR3591709	Stem	13.257
	SRR3591710	White floral bud	49.367
	SRR3591711	White flower	40.893
	SRR3591712	Green floral bud	44.165
	SRR3591713	Yellow flower	29.545
SRP173429	SRR8316895	Juvenile bud stage	11.488
	SRR8316896	Juvenile bud stage	24.516
	SRR8316897	Juvenile bud stage	7.517
	SRR8316894	Third green stage	8.413
	SRR8316900	Third green stage	23.996
	SRR8316901	Third green stage	28.241
	SRR8316898	Complete white stage	15.183
	SRR8316899	Complete white stage	24.646
	SRR8316903	Complete white stage	15.563
	SRR8316902	Silver flowering stage	15.826
	SRR8316904	Silver flowering stage	13.495
	SRR8316905	Silver flowering stage	5.404
	SRR8316906	Gold flowering stage	15.610
	SRR8316907	Gold flowering stage	30.546
	SRR8316908	Gold flowering stage	24.992
SRP132670	SRR6706286	Control	37.528
	SRR6706287	Light intensity 50%	37.410
	SRR6706288	Light intensity 20%	35.779
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.895
	CNS0095593	Slightly white alabastrum(diploid) 2	16.517
	CNS0095594	Slightly white alabastrum(diploid) 3	19.723
	CNS0095595	Whole white alabastrum(diploid) 2	10.842
	CNS0095596	Whole white alabastrum(diploid) 3	13.996
	CNS0095597	Whole white alabastrum(diploid) 4	13.709
	CNS0095598	Silvery flower (diploied) 1	6.460
	CNS0095599	Silvery flower (diploied) 2	9.684
	CNS0095600	Silvery flower (diploied) 3	29.802
	CNS0095601	Golden flower (diploid) 1	6.646
	CNS0095602	Golden flower (diploid) 2	20.789
	CNS0095603	Golden flower (diploid) 3	18.677
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.513
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.367
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.981
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.145
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.310
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.370
	CNS0095610	Silvery flower (tetraploid) 1	29.554
	CNS0095611	Silvery flower (tetraploid) 2	20.486
	CNS0095612	Silvery flower (tetraploid) 3	33.673
	CNS0095613	Golden flower (tetraploid) 1	11.584
	CNS0095614	Golden flower (tetraploid) 2	18.542
	CNS0095615	Golden flower (tetraploid) 3	13.482
CRA001975	CRR073297	Stem 1	13.607
	CRR073298	Stem 2	17.769
	CRR073299	Stem 3	17.177
	CRR073300	Leaf 1	13.141
	CRR073301	Leaf 2	16.336
	CRR073302	Leaf 3	13.349
	CRR073303	Juvenile bud 1	9.634
	CRR073304	Juvenile bud 2	8.122
	CRR073305	Juvenile bud 3	15.096
	CRR073306	Third green 1	8.225
	CRR073307	Third green 2	12.641
	CRR073308	Third green 3	10.537
	CRR073309	Second white 1	9.211
	CRR073310	Second white 2	7.588
	CRR073311	Second white 3	8.959
	CRR073312	Silver flowering 1	6.738
	CRR073313	Silver flowering 2	5.986
	CRR073314	Silver flowering 3	9.603
	CRR073315	Gold flowering 1	10.439
	CRR073316	Gold flowering 2	16.295
	CRR073317	Gold flowering 3	8.271
	CRR073318	Tawny withering 1	18.410
	CRR073319	Tawny withering 2	12.714
	CRR073320	Tawny withering 3	12.512