Gene detail

Detail information of GWHGAAZE032114

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656540.1	0	PREDICTED: uncharacterized protein LOC100251651 isoform X1 [Vitis vinifera]
COG	YP_001958461.1	7E-28	hypothetical protein Aasi_1443
Swissprot	tr\|Q05609\|CTR1_ARATH	8E-50	Serine/threonine-protein kinase CTR1
trEMBL	tr\|F6HCI9\|F6HCI9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49935.1}
TAIR10	AT3G46920.1	3E-164	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	70759868	70768335	+
GWHAAZE00000009	mRNA	70759868	70768335	+
GWHAAZE00000009	exon	70759868	70762730	+
GWHAAZE00000009	exon	70762988	70763049	+
GWHAAZE00000009	exon	70763171	70763239	+
GWHAAZE00000009	exon	70763783	70763935	+
GWHAAZE00000009	exon	70764042	70764205	+
GWHAAZE00000009	exon	70764669	70764816	+
GWHAAZE00000009	exon	70767203	70767325	+
GWHAAZE00000009	exon	70767389	70767476	+
GWHAAZE00000009	exon	70767746	70768335	+
GWHAAZE00000009	CDS	70759868	70762730	+
GWHAAZE00000009	CDS	70762988	70763049	+
GWHAAZE00000009	CDS	70763171	70763239	+
GWHAAZE00000009	CDS	70763783	70763935	+
GWHAAZE00000009	CDS	70764042	70764205	+
GWHAAZE00000009	CDS	70764669	70764816	+
GWHAAZE00000009	CDS	70767203	70767325	+
GWHAAZE00000009	CDS	70767389	70767476	+
GWHAAZE00000009	CDS	70767746	70767951	+
GWHAAZE00000009	three_prime_UTR	70767952	70768335	+

Transcript Sequence
>GWHTAAZE032152 ATGGCAGAAGAGTCTCATGTTTTGCCGGCGACTACATCGGGGAGGAACGTTGACGGGATATATCAGAACCCGGTTCGAGATGTTAGTAGTCCCCTGTCCGCTCCAGTTTATTATCCTACTACAGTTTCGGATGCTGGGATTTTAGGGTTAGGGTTTGGGAATGCAGCGCCAGCTGTCACTGGCCAGTTCCCACGCATGCCGGGGGCGGGTATTGGGGCTGCCGGTGTTAATTCGACAACTGGGTTTTCTTATAATCCAAATTTGGGGAACCGGGTCAGTGGCGGTGGTTCTGATCAGGCTAGTGATGAGGGTGGTGATGATTCGGTTTCCGGGAAGAAGGTTAAGTTCTTGTGTAGTTTTGGCGGGAAGATTTTGCCTAGACCAAGCGATGGGGCGTTGAGATACGTAGGTGGGCAAACTAGGATTATTAGTTTTAGGAGGGACGTGAATTTTAATGAATTAGTTCAGAAGATAGTGGATACTTATGGGCAAAATGTGGTTATCAAGTACCAGTTGCCTGATGAAGATCTTGATGCGCTAGTGTCGGTTTCGTGCCCAGATGATCTGGAGAATATGATGGATGAGTACGAGAAATTGGTTGCTAGGTCTTCAGATGGGTCGGCTAAGTTAAGGGTGTTCTTGTTTTCAGCTTCTGAGCTTGATTCTTCTGGCGTAATGCAAGTTGGGGATTTGCAAGATAGCGGGCAGAGATATGTCGAGGCGGTGAACGGGGTTCTGGATGGTGTTCTTGGCGGAGGTATTACGAGGAAGGATAGTATAACTAGTGCTGCTTCGACGCAAAATTCAGGTTATAGTGGGACCGAGGGTGTTGATAGCTCAGTTCATGGTCCAGAGGATGTTACTGGCCCGCTATCTACGGGCAAGTTATCACCTAGGGCAAATGTTACCATCACCCATGAAACTGCTCCGAAGATTGTTTATGTTGAAGTTTCTGGTTCCCCATTGGGTATTACACCAGTTGGTTCTGCTCCTCCTCCAATTTTACCTGTACCGCAGCAGCAAATGCATGTTGATTTGCAGCAACCAGTGGTCACTTTTCCACAAACGGCACCTTACTTGCAGACATATGCAGATCCCCATCAAGAAACAATAAACCGGGCTGATTATGTTCAGGTTCCTTCCCAAATGGGGTTCCCAGCTCAACTCATGGGGACAGCTGGGCTGCCCATGTTCGCCCAACCGCAATTCCGTGATAGTGCTGTTGGTGTTTCCCCTCATCAATATATTCCCGCTGTTCACATGACGATGACTCCTTTCTCTCATGTCAACATCACACCGAACATGGTTCCACCACAGGTTCAACCTCACCAAGTTTGTTTCGAACATTATCCAGAGGTACAGAGGGTTGTGCAGCTTCCCGGTGACCAAAGTTACAATGCATATCAAGCTCAAGTCCCTCCTACCGCAGGTTGGGTGCCTCAGCAGCAGCAAATGGCCCTTTCTGAGGGTTGGGTACCACAGCCGCAGGTGATTTTTCAGGATAAAATCACCAGGCTTGAGGACTGTGTTATGTGTCAAAAAGCATTACCTCATGCCCATTCGGATACAGTTACACAGGGCATAAAAGAAATCCCTACAACCGCTATATCCGACTTGAACTCTGTCTATCACAGTCTCCAGATGCAGGGGAATATAAGAGGACGGCCTACAAACACGGGTGCTGTAACAGGAGCCTTGCTCGACGGTATTGTTGGACAAGAAGGAGCTGAGGTGCGACCAAGTATCCATCATAACGCTGAAAAATCCCAACTAGAGGGAGTTGTGGTCTCACAAAATTTGGACGGACTCTACAAAAATGATAGAACTCTTCTCCAGAAAGCGGACAATCCCGATCATCATAAGGTACCCGCTCCCCAAGGTGGGGTACTACCGCCTTACAATGTACTCATGGGTACCGGCCAAGAAAATGCTGTCCAGCAGGTTCTTTTGCCTACCCAATACCAGGTTAAACAGGAGGAATTGATGAACAAGCCTGTTTATAGTGATACCTCTCCTATTGGAGTTATGCCCCCACAAACTTCAGACCATTTTGTTCTTGATTCATCGAAACTTAGTGGCATTAATCGTAAAGAAGATAGTTTTGAGCCCTTAAGGCAAGCTGATGGGAGGATGGAAAATCTCCAGATACACCGCCCGGAAGTTTTTTTGAACAACGAGCCAAGTAAATCACAAGTTGATAATCCCACAAAAGAAGACATCTTGGGAAACGAGTCACAAAATCCGAATCTAGATATTTTTTTTAGAAAACCCACAATGATAAACCAGGCCAGACAAATTGAAATGCTGCCTTGTACATCAAATGAGGTTCCTTACACGCATGATTTTCGACCATTGGATTCCTATGAAGTGGCACAACTACCTCATTTAGGTGGTCCCCCTTATCCACCTTCAAAGCCCGCTGTTAACCAATTAACCCCTGATGAGGTTTCGCATGGCAACTCTTCATTTTCCCATGTAACTGAAAGGATTCTACCTATAGGTGAATGGAAGGATAATTCTCTGGGAGTCCACCCAAAGATGGTACCTAGTGATGTAGAAGCTGTACCATCAAACGCCAATTTTGCATCCTCTCTATTTCCATCTAATGGAGTTGGAGATATACAAGATAGCTCAAATTCACTTTTCAGCAACCAGGATCCTTGGAATTTGCAGCACGATAATCATTTACCACCCCCCAGGCCAACCAAAATATTGATGAAAAAAGATGGTGCCACAAATCCTTTTGAGAATCGTTTTGGCAATATTGGGGAACCATTAGCAGGCAATATTGAGGATGGAGTTTACCAGCCATCTGGTAATTTCGATGTTGATTTTGGTGTAGAGCAAGGTCGGTCCAGCAAAGCCAGCCAAAACAGCAGCGTTCATGATAGTAATGTGGAAATGCAGATGGGAGAGCGATATGAGGAAGTTACCAAACTGCCAGGAAAGATGAATATTGGATTTCCTGTATCCGATGGCCTTGGTTGCTTACAGATTATAAAGAACGATGATCTTGAAGAGCTTCGTGAATTGGGTTCTGGAACCTTTGGTACGGTTTACCATGGGAAGTGGAGGGGTTCTGATGTAGCAATCAAACGGATCAACGATAGATGTTTTGCTGGAAAACCCTCTGAACAAGACCGCATGAGAGAGGACTTTTGGAATGAGGCCATCAAGCTAGCTGACTTGCACCATCCGAATGTGGTGGCTTTTTATGGTGTCGTTATTGATGGTCCTGGTGATACTGTGGCCACGGTAACCGAATACATGGTAAATGGTTCTCTAAGAAATGCTCTACAGAAGAATGAGAGGAGTCTTGATAAGCGTAAGCGTCTCATAATTGCAATGGATGTGGCTTTTGGAATGGAGTACTTGCATGGAAAGAACATTGTACACTTTGACCTGAAAAGTGACAATCTGCTTGTCAATCTTCGTGATCCGCACCGCCCAATATGCAAGGTTGGTGATTTGGGGCTATCCAAGGTGAAATGTCAGACGCTAATCTCAGGTGGCGTGCGGGGAACACTTCCTTGGATGGCACCCGAGCTTCTCAATGGCAGCAGTAGCCTCGTCTCCGAGAAGGTTGATGTTTTCTCATTTGGAATCGTAATGTGGGAACTTCTCACCGGAGATGAGCCATACGCAGACCTGCATTACGGTGCTATCATTGGGGGAATTGTAAGCAACACACTGCGACCTCCTGTGCCGGAATCTTGTGATCCTGAGTGGAGATCTCTAATGGAGAGATGCTGGTCTGCGGAGCCTCTAGAAAGGCCGAGCTTCACCGATGTTGCGAATCAGTTGCGTATTATGGCTGCAAAAGTTCCTCAAAAAGCACAAAATCAGCAGCAACCTCAACCTCAAGCTAGGAGCTAATTTAACGCATATTTGTGTTCCTTTGTTATAGCGTGTCAATTACATGGTCAGCACGCGGGAGTAAAACATGCGTTTTGTTCTAGCGTGCAGCAAGAAAAGCTGTTTCTTCAAGTGGGATTGCCAGTTTGAATGTGTCAAAAGTTGTTTGGTTGAACTTTTTTGTTTACGAAAATGGGCTAGATGATACAGGTTTCTCTGTTATACACACGAGCACACCATTATATGCAGATTGGTTGAGAGTTATACTAGTGGAATTGGCAAATGAGTTTTATATGCAACTTCCACGCATATTTGCATAATGAGAATATTGGTGTCGCAGTACTAGTTAGTTTACCGAAAATGTGCTTGTTGGTTTATATTATATTTTGCACTATTTTGGCAACA

Network for GWHGAAZE032114

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00564.25	PB1	133	216	4.70E-16
PF07714.18	PK_Tyr_Ser-Thr	1007	1268	1.60E-59

Protein Sequence

>GWHPAAZE032134
MAEESHVLPATTSGRNVDGIYQNPVRDVSSPLSAPVYYPTTVSDAGILGLGFGNAAPAVTGQFPRMPGAGIGAAGVNSTTGFSYNPNLGNRVSGGGSDQASDEGGDDSVSGKKVKFLCSFGGKILPRPSDGALRYVGGQTRIISFRRDVNFNELVQKIVDTYGQNVVIKYQLPDEDLDALVSVSCPDDLENMMDEYEKLVARSSDGSAKLRVFLFSASELDSSGVMQVGDLQDSGQRYVEAVNGVLDGVLGGGITRKDSITSAASTQNSGYSGTEGVDSSVHGPEDVTGPLSTGKLSPRANVTITHETAPKIVYVEVSGSPLGITPVGSAPPPILPVPQQQMHVDLQQPVVTFPQTAPYLQTYADPHQETINRADYVQVPSQMGFPAQLMGTAGLPMFAQPQFRDSAVGVSPHQYIPAVHMTMTPFSHVNITPNMVPPQVQPHQVCFEHYPEVQRVVQLPGDQSYNAYQAQVPPTAGWVPQQQQMALSEGWVPQPQVIFQDKITRLEDCVMCQKALPHAHSDTVTQGIKEIPTTAISDLNSVYHSLQMQGNIRGRPTNTGAVTGALLDGIVGQEGAEVRPSIHHNAEKSQLEGVVVSQNLDGLYKNDRTLLQKADNPDHHKVPAPQGGVLPPYNVLMGTGQENAVQQVLLPTQYQVKQEELMNKPVYSDTSPIGVMPPQTSDHFVLDSSKLSGINRKEDSFEPLRQADGRMENLQIHRPEVFLNNEPSKSQVDNPTKEDILGNESQNPNLDIFFRKPTMINQARQIEMLPCTSNEVPYTHDFRPLDSYEVAQLPHLGGPPYPPSKPAVNQLTPDEVSHGNSSFSHVTERILPIGEWKDNSLGVHPKMVPSDVEAVPSNANFASSLFPSNGVGDIQDSSNSLFSNQDPWNLQHDNHLPPPRPTKILMKKDGATNPFENRFGNIGEPLAGNIEDGVYQPSGNFDVDFGVEQGRSSKASQNSSVHDSNVEMQMGERYEEVTKLPGKMNIGFPVSDGLGCLQIIKNDDLEELRELGSGTFGTVYHGKWRGSDVAIKRINDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVIDGPGDTVATVTEYMVNGSLRNALQKNERSLDKRKRLIIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGDEPYADLHYGAIIGGIVSNTLRPPVPESCDPEWRSLMERCWSAEPLERPSFTDVANQLRIMAAKVPQKAQNQQQPQPQARS

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-6

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.275
	SRR3591706	second leaf	13.176
	SRR3591707	mature leaf	12.481
	SRR3591708	Shoot apex	20.707
	SRR3591709	Stem	22.852
	SRR3591710	White floral bud	28.557
	SRR3591711	White flower	34.513
	SRR3591712	Green floral bud	20.660
	SRR3591713	Yellow flower	28.641
SRP173429	SRR8316895	Juvenile bud stage	14.636
	SRR8316896	Juvenile bud stage	18.235
	SRR8316897	Juvenile bud stage	9.268
	SRR8316894	Third green stage	7.707
	SRR8316900	Third green stage	18.383
	SRR8316901	Third green stage	18.559
	SRR8316898	Complete white stage	8.880
	SRR8316899	Complete white stage	24.766
	SRR8316903	Complete white stage	23.302
	SRR8316902	Silver flowering stage	17.448
	SRR8316904	Silver flowering stage	33.748
	SRR8316905	Silver flowering stage	18.610
	SRR8316906	Gold flowering stage	63.934
	SRR8316907	Gold flowering stage	45.004
	SRR8316908	Gold flowering stage	55.809
SRP132670	SRR6706286	Control	24.311
	SRR6706287	Light intensity 50%	24.196
	SRR6706288	Light intensity 20%	24.463
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.010
	CNS0095593	Slightly white alabastrum(diploid) 2	11.787
	CNS0095594	Slightly white alabastrum(diploid) 3	10.294
	CNS0095595	Whole white alabastrum(diploid) 2	11.271
	CNS0095596	Whole white alabastrum(diploid) 3	8.696
	CNS0095597	Whole white alabastrum(diploid) 4	9.789
	CNS0095598	Silvery flower (diploied) 1	28.853
	CNS0095599	Silvery flower (diploied) 2	23.806
	CNS0095600	Silvery flower (diploied) 3	56.743
	CNS0095601	Golden flower (diploid) 1	21.489
	CNS0095602	Golden flower (diploid) 2	52.791
	CNS0095603	Golden flower (diploid) 3	52.081
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.481
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.218
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.450
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.312
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.381
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.531
	CNS0095610	Silvery flower (tetraploid) 1	54.392
	CNS0095611	Silvery flower (tetraploid) 2	60.012
	CNS0095612	Silvery flower (tetraploid) 3	56.382
	CNS0095613	Golden flower (tetraploid) 1	31.031
	CNS0095614	Golden flower (tetraploid) 2	45.124
	CNS0095615	Golden flower (tetraploid) 3	70.487
CRA001975	CRR073297	Stem 1	22.935
	CRR073298	Stem 2	21.709
	CRR073299	Stem 3	16.487
	CRR073300	Leaf 1	25.032
	CRR073301	Leaf 2	23.060
	CRR073302	Leaf 3	14.630
	CRR073303	Juvenile bud 1	19.270
	CRR073304	Juvenile bud 2	12.007
	CRR073305	Juvenile bud 3	31.320
	CRR073306	Third green 1	12.532
	CRR073307	Third green 2	8.875
	CRR073308	Third green 3	13.924
	CRR073309	Second white 1	23.592
	CRR073310	Second white 2	21.656
	CRR073311	Second white 3	29.916
	CRR073312	Silver flowering 1	25.838
	CRR073313	Silver flowering 2	25.148
	CRR073314	Silver flowering 3	22.347
	CRR073315	Gold flowering 1	6.278
	CRR073316	Gold flowering 2	11.146
	CRR073317	Gold flowering 3	5.914
	CRR073318	Tawny withering 1	13.106
	CRR073319	Tawny withering 2	10.474
	CRR073320	Tawny withering 3	12.822